Folgen
Gyu Rie Lee
Gyu Rie Lee
University of Washington, Institute for Protein Design
Bestätigte E-Mail-Adresse bei uw.edu
Titel
Zitiert von
Zitiert von
Jahr
Accurate prediction of protein structures and interactions using a three-track neural network
M Baek, F DiMaio, I Anishchenko, J Dauparas, S Ovchinnikov, GR Lee, ...
Science 373 (6557), 871-876, 2021
33772021
Prediction of protein structure and interaction by GALAXY protein modeling programs
WH Shin, GR Lee, L Heo, H Lee, C Seok
Bio Design 2 (1), 1-11, 2014
1902014
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
1662016
De novo design of luciferases using deep learning
AHW Yeh, C Norn, Y Kipnis, D Tischer, SJ Pellock, D Evans, P Ma, ...
Nature 614 (7949), 774-780, 2023
1602023
Effective protein model structure refinement by loop modeling and overall relaxation
GR Lee, L Heo, C Seok
Proteins: Structure, Function, and Bioinformatics 84, 293-301, 2016
1042016
Protein loop modeling using a new hybrid energy function and its application to modeling in inaccurate structural environments
H Park, GR Lee, L Heo, C Seok
PloS one 9 (11), e113811, 2014
922014
GalaxyRefine2: simultaneous refinement of inaccurate local regions and overall protein structure
GR Lee, J Won, L Heo, C Seok
Nucleic acids research 47 (W1), W451-W455, 2019
902019
Galaxy7TM: flexible GPCR–ligand docking by structure refinement
GR Lee, C Seok
Nucleic acids research 44 (W1), W502-W506, 2016
462016
High‐accuracy refinement using Rosetta in CASP13
H Park, GR Lee, DE Kim, I Anishchenko, Q Cong, D Baker
Proteins: Structure, Function, and Bioinformatics 87 (12), 1276-1282, 2019
412019
Biophysical and functional characterization of Norrin signaling through Frizzled4
I Bang, HR Kim, AH Beaven, J Kim, SB Ko, GR Lee, W Kan, H Lee, W Im, ...
Proceedings of the National Academy of Sciences 115 (35), 8787-8792, 2018
382018
Generalized biomolecular modeling and design with RoseTTAFold All-Atom
R Krishna, J Wang, W Ahern, P Sturmfels, P Venkatesh, I Kalvet, GR Lee, ...
Science, eadl2528, 2024
372024
Accurate protein structure prediction: what comes next
C Seok, M Baek, M Steinegger, H Park, GR Lee, J Won
Biodesign 9 (3), 47-50, 2021
312021
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12
C Keasar, LJ McGuffin, B Wallner, G Chopra, B Adhikari, D Bhattacharya, ...
Scientific reports 8 (1), 9939, 2018
232018
Simultaneous refinement of inaccurate local regions and overall structure in the CASP12 protein model refinement experiment
GR Lee, L Heo, C Seok
Proteins: Structure, Function, and Bioinformatics 86, 168-176, 2018
182018
Benchmarking predictions of allostery in liver pyruvate kinase in CAGI4
Q Xu, Q Tang, P Katsonis, O Lichtarge, D Jones, S Bovo, G Babbi, ...
Human mutation 38 (9), 1123-1131, 2017
182017
Evaluating GPCR modeling and docking strategies in the era of deep learning-based protein structure prediction
S Lee, S Kim, GR Lee, S Kwon, H Woo, C Seok, H Park
Computational and Structural Biotechnology Journal 21, 158-167, 2023
172023
De novo design of high-affinity protein binders to bioactive helical peptides
SV Torres, PJY Leung, ID Lutz, P Venkatesh, JL Watson, F Hink, ...
Biorxiv, 2022.12. 10.519862, 2022
172022
Conformational sampling of flexible ligand-binding protein loops
GR Lee, WH Shin, HB Park, SM Shin, CO Seok
Bulletin of the Korean Chemical Society 33 (3), 770-774, 2012
172012
Evaluation of galaxydock based on the community structure–activity resource 2013 and 2014 benchmark studies
WH Shin, GR Lee, C Seok
Journal of Chemical Information and Modeling 56 (6), 988-995, 2016
162016
Template‐based modeling and ab initio refinement of protein oligomer structures using GALAXY in CAPRI round 30
H Lee, M Baek, GR Lee, S Park, C Seok
Proteins: Structure, Function, and Bioinformatics 85 (3), 399-407, 2017
152017
Das System kann den Vorgang jetzt nicht ausführen. Versuchen Sie es später erneut.
Artikel 1–20