Peng Zhou
Peng Zhou
Post Doctoral Associate, University of Minnesota
Verified email at umn.edu - Homepage
Title
Cited by
Cited by
Year
The Medicago genome provides insight into the evolution of rhizobial symbioses
ND Young, F Debellé, GED Oldroyd, R Geurts, SB Cannon, MK Udvardi, ...
Nature 480 (7378), 520-524, 2011
10792011
Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula
A Branca, TD Paape, P Zhou, R Briskine, AD Farmer, J Mudge, AK Bharti, ...
Proceedings of the National Academy of Sciences 108 (42), E864-E870, 2011
2082011
Genomic signature of adaptation to climate in Medicago truncatula
JB Yoder, J Stanton-Geddes, P Zhou, R Briskine, ND Young, P Tiffin
Genetics 196 (4), 1263-1275, 2014
1392014
Candidate genes and genetic architecture of symbiotic and agronomic traits revealed by whole-genome, sequence-based association genetics in Medicago truncatula
J Stanton-Geddes, T Paape, B Epstein, R Briskine, J Yoder, J Mudge, ...
PloS one 8 (5), e65688, 2013
1272013
Detecting small plant peptides using SPADA (small peptide alignment discovery application)
P Zhou, KAT Silverstein, L Gao, JD Walton, S Nallu, J Guhlin, ND Young
BMC bioinformatics 14 (1), 335, 2013
652013
Fine-Scale Population Recombination Rates, Hotspots, and Correlates of Recombination in the Medicago truncatula Genome
T Paape, P Zhou, A Branca, R Briskine, N Young, P Tiffin
Genome biology and evolution 4 (5), 726-737, 2012
652012
Phylogenetic signal variation in the genomes of Medicago (Fabaceae)
JB Yoder, R Briskine, J Mudge, A Farmer, T Paape, K Steele, GD Weiblen, ...
Systematic biology 62 (3), 424-438, 2013
542013
Selection, genome‐wide fitness effects and evolutionary rates in the model legume Medicago truncatula
T Paape, T Bataillon, P Zhou, T JY Kono, R Briskine, ND Young, P Tiffin
Molecular ecology 22 (13), 3525-3538, 2013
472013
Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes
P Zhou, KAT Silverstein, T Ramaraj, J Guhlin, R Denny, J Liu, AD Farmer, ...
BMC genomics 18 (1), 1-14, 2017
452017
Strategies for optimizing BioNano and Dovetail explored through a second reference quality assembly for the legume model, Medicago truncatula
KM Moll, P Zhou, T Ramaraj, D Fajardo, NP Devitt, MJ Sadowsky, ...
BMC genomics 18 (1), 1-16, 2017
382017
Hybrid assembly with long and short reads improves discovery of gene family expansions
JR Miller, P Zhou, J Mudge, J Gurtowski, H Lee, T Ramaraj, BP Walenz, ...
BMC genomics 18 (1), 541, 2017
292017
Patterns of divergence of a large family of nodule cysteine‐rich peptides in accessions of Medicago truncatula
S Nallu, KAT Silverstein, P Zhou, ND Young, KA VandenBosch
The Plant Journal 78 (4), 697-705, 2014
292014
Transposable elements contribute to dynamic genome content in maize
SN Anderson, MC Stitzer, AB Brohammer, P Zhou, JM Noshay, ...
The Plant Journal 100 (5), 1052-1065, 2019
282019
Dynamic patterns of gene expression additivity and regulatory variation throughout maize development
P Zhou, CN Hirsch, SP Briggs, NM Springer
Molecular plant 12 (3), 410-425, 2019
152019
Monitoring the interplay between transposable element families and DNA methylation in maize
JM Noshay, SN Anderson, P Zhou, L Ji, W Ricci, Z Lu, MC Stitzer, ...
PLoS genetics 15 (9), e1008291, 2019
122019
Dynamic patterns of transcript abundance of transposable element families in maize
SN Anderson, MC Stitzer, P Zhou, J Ross-Ibarra, CD Hirsch, NM Springer
G3: Genes, Genomes, Genetics 9 (11), 3673-3682, 2019
112019
Exploring structural variants in environmentally sensitive gene families
ND Young, P Zhou, KAT Silverstein
Current opinion in plant biology 30, 19-24, 2016
72016
Meta gene regulatory networks in maize highlight functionally relevant regulatory interactions
P Zhou, Z Li, E Magnusson, FG Cano, PA Crisp, JM Noshay, E Grotewold, ...
The Plant Cell 32 (5), 1377-1396, 2020
62020
ODG: Omics database generator-a tool for generating, querying, and analyzing multi-omics comparative databases to facilitate biological understanding
J Guhlin, KAT Silverstein, P Zhou, P Tiffin, ND Young
BMC bioinformatics 18 (1), 367, 2017
62017
Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes
PA Crisp, AP Marand, JM Noshay, P Zhou, Z Lu, RJ Schmitz, NM Springer
BioRxiv, 2020
22020
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Articles 1–20