Marcel H Schulz

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Martin VingronMax-Planck-Institut für molekulare GenetikVerified email at molgen.mpg.de
Peter RobinsonProfessor of Computational Biology, The Jackson Laboratory for Genomic MedicineVerified email at jax.org
Sebastian BauerVerified email at sebastianbauer.info
Hugues RichardRobert Koch Institute (Researcher) / Sorbonne University (Ass. Prof., on leave)Verified email at upmc.fr
Sebastian KöhlerSenior Information Architect, Ada Health; Member of Monarch InitiativeVerified email at ada.com
Florian SchmidtImmunoScapeVerified email at immunoscape.com
Martin SimonProfessor Molecular Cell BiologyVerified email at uni-wuppertal.de
Ziv Bar-JosephProfessor of Computational Biology and Machine Learning, School of Computer Science, Carnegie Mellon UniversityVerified email at andrew.cmu.edu
Markus ListBig Data in BioMedicine, Chair of Experimental Bioinformatics, TUM School of Life SciencesVerified email at wzw.tum.de
Karl JV NordströmAstraZeneca ABVerified email at astrazeneca.com
Kai YeXi'an Jiaotong UniversityVerified email at xjtu.edu.cn
David WeeseD4L data4life gGmbHVerified email at data4life.care
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
Daniel ZerbinoMosaic TherapeuticsVerified email at mosaic-tx.com
Jörn WalterProfessor of Genetics & Epigenetics, Saarland UniveristyVerified email at mx.uni-saarland.de
Sonja M. KesslerInstitute of Pharmacy, Experimental Pharmacology for Natural Sciences, Martin Luther UniversityVerified email at pharmazie.uni-halle.de
Gilles GasparoniUniversität des SaarlandesVerified email at mx.uni-saarland.de
Sivarajan KarunanithiBioinformatician at IMB gGmbHVerified email at imb-mainz.de
Knut ReinertFU Berlin / MPI MolgenVerified email at fu-berlin.de
Jonathan GökeGenome Institute of SingaporeVerified email at gis.a-star.edu.sg

Marcel H Schulz

Professor of Computational Biology, Goethe University Frankfurt, Germany

Verified email at em.uni-frankfurt.de - Homepage

Epigenomics Data Science Gene Regulation Single Cell Analysis Machine Learning Computer Science


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Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads K Ye, MH Schulz, Q Long, R Apweiler, Z Ning Bioinformatics 25 (21), 2865-2871, 2009	1912	2009
Oases: Robust de novo RNA-seq assembly across the dynamic range of expression levels MH Schulz, DR Zerbino, M Vingron, E Birney Bioinformatics, 2012	1528	2012
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome M Sultan, MH Schulz, H Richard, A Magen, A Klingenhoff, M Scherf, ... Science 321 (5891), 956-960, 2008	1499	2008
Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013	641	2013
Clinical diagnostics in human genetics with semantic similarity searches in ontologies S Köhler, MH Schulz, P Krawitz, S Bauer, S Dölken, CE Ott, C Mundlos, ... The American Journal of Human Genetics 85 (4), 457-464, 2009	436	2009
The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery HG Stunnenberg, M Hirst, International Human Epigenome Consortium Cell 167 (5), 1145-1149, 2016	374	2016
Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments H Richard, MH Schulz, M Sultan, A Nürnberger, S Schrinner, D Balzereit, ... Nucleic Acids Research 38 (10), e112-e112, 2010	205	2010
Identification of transcription factor binding sites using ATAC-seq Z Li, MH Schulz, T Look, M Begemann, M Zenke, IG Costa Genome biology 20 (1), 1-21, 2019	198	2019
Mapping translocation breakpoints by next-generation sequencing W Chen, V Kalscheuer, A Tzschach, C Menzel, R Ullmann, MH Schulz, ... Genome research 18 (7), 1143-1149, 2008	179	2008
Epigenomic Profiling of Human CD4+ T Cells Supports a Linear Differentiation Model and Highlights Molecular Regulators of Memory Development P Durek, K Nordström, G Gasparoni, A Salhab, C Kressler, M de Almeida, ... Immunity 45 (5), 1148-1161, 2016	160	2016
DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data MH Schulz, WE Devanny, A Gitter, S Zhong, J Ernst, Z Bar-Joseph BMC Systems Biology 6 (1), 104, 2012	118	2012
Probabilistic error correction for RNA sequencing HS Le, MH Schulz, BM McCauley, VF Hinman, Z Bar-Joseph Nucleic acids research 41 (10), e109-e109, 2013	99	2013
Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction F Schmidt, N Gasparoni, G Gasparoni, K Gianmoena, C Cadenas, ... Nucleic acids research 45 (1), 54-66, 2017	84	2017
Detecting genomic indel variants with exact breakpoints in single-and paired-end sequencing data using SplazerS AK Emde, MH Schulz, D Weese, R Sun, M Vingron, VM Kalscheuer, ... Bioinformatics, 2012	75	2012
Fiona: a parallel and automatic strategy for read error correction MH Schulz, D Weese, M Holtgrewe, V Dimitrova, S Niu, K Reinert, ... Bioinformatics 30 (17), i356-i363, 2014	72	2014
Reconstructing dynamic microRNA-regulated interaction networks MH Schulz, KV Pandit, CLL Cardenas, N Ambalavanan, N Kaminski, ... Proceedings of the National Academy of Sciences 110 (39), 15686-15691, 2013	72	2013
DECOD: fast and accurate discriminative DNA motif finding P Huggins, S Zhong, I Shiff, R Beckerman, O Laptenko, C Prives, ... Bioinformatics 27 (17), 2361-2367, 2011	62	2011
Bayesian Ontology Querying for Accurate and Noise-Tolerant Semantic Searches S Bauer, S Köhler, MH Schulz, PN Robinson Bioinformatics, 2012	58	2012
Estimation of Pairwise Sequence Similarity of Mammalian Enhancers with Word Neighbourhood Counts J Göke, MH Schulz, J Lasserre, M Vingron Bioinformatics, 2012	56	2012
The lncRNA Locus Handsdown Regulates Cardiac Gene Programs and Is Essential for Early Mouse Development N Ritter, T Ali, N Kopitchinski, P Schuster, A Beisaw, DA Hendrix, ... Developmental cell 50 (5), 644-657. e8, 2019	42	2019

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