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Zheng Zuo
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Year
Measuring quantitative effects of methylation on transcription factor–DNA binding affinity
Z Zuo, B Roy, YK Chang, D Granas, GD Stormo
Science advances 3 (11), eaao1799, 2017
752017
Correlation of genomic and physiological traits of Thermoanaerobacter species with biofuel yields
CL Hemme, MW Fields, Q He, Y Deng, L Lin, Q Tu, H Mouttaki, A Zhou, ...
Applied and Environmental Microbiology 77 (22), 7998-8008, 2011
532011
High-resolution specificity from DNA sequencing highlights alternative modes of Lac repressor binding
Z Zuo, GD Stormo
Genetics 198 (3), 1329-1343, 2014
462014
Spec-seq: determining protein–DNA-binding specificity by sequencing
Z Zuo, YK Chang, GD Stormo
Briefings in functional genomics 14 (1), 30-38, 2015
432015
Response element composition governs correlations between binding site affinity and transcription in glucocorticoid receptor feed-forward loops
SK Sasse, Z Zuo, V Kadiyala, L Zhang, MA Pufall, MK Jain, TL Phang, ...
Journal of Biological Chemistry 290 (32), 19756-19769, 2015
412015
A modified bacterial one-hybrid system yields improved quantitative models of transcription factor specificity
RG Christensen, A Gupta, Z Zuo, LA Schriefer, SA Wolfe, GD Stormo
Nucleic acids research 39 (12), e83-e83, 2011
332011
Quantitative profiling of selective Sox/POU pairing on hundreds of sequences in parallel by Coop-seq
YK Chang, Y Srivastava, C Hu, A Joyce, X Yang, Z Zuo, JJ Havranek, ...
Nucleic acids research 45 (2), 832-845, 2017
322017
A quantitative understanding of lac repressor’s binding specificity and flexibility
Z Zuo, Y Chang, GD Stormo
Quantitative Biology 3, 69-80, 2015
152015
On the dependent recognition of some long zinc finger proteins
Z Zuo, T Billings, M Walker, PM Petkov, PM Fordyce, GD Stormo
Nucleic Acids Research 51 (11), 5364-5376, 2023
12*2023
Quantitative profiling of BATF family proteins/JUNB/IRF hetero-trimers using Spec-seq
YK Chang, Z Zuo, GD Stormo
BMC Molecular Biology 19, 1-9, 2018
122018
Quantitative specificity of STAT1 and several variants
B Roy, Z Zuo, GD Stormo
Nucleic acids research 45 (14), 8199-8207, 2017
122017
Encoding, regression, and classification of transcription factors’ Specificity and methylation effects
Z Zuo
OBM Genetics 5 (3), 1-1, 2021
32021
THE1B may have no role in human pregnancy due to ZNF430-mediated silencing
Z Zuo
Mobile DNA 14 (1), 6, 2023
22023
Quantifying the arms race between LINE-1 and KRAB-zinc finger genes through TECookbook
Z Zuo
NAR Genomics and Bioinformatics 5 (3), lqad078, 2023
2023
The successive emergence of ERVL-MaLRs in primates
Z Zuo
Virus Evolution 9 (2), vead072, 2023
2023
From motif to function: Inferring the functions of long zinc finger proteins through combinatorial selection
Z Zuo
bioRxiv, 2022.04. 19.488842, 2022
2022
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Articles 1–16