| Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis A Viehweger, S Krautwurst, K Lamkiewicz, R Madhugiri, J Ziebuhr, ... Genome research 29 (9), 1545-1554, 2019 | 223 | 2019 |
| VIDHOP, viral host prediction with deep learning F Mock, A Viehweger, E Barth, M Marz Bioinformatics 37 (3), 318-325, 2021 | 59 | 2021 |
| Evaluation of microbiome enrichment and host DNA depletion in human vaginal samples using Oxford Nanopore’s adaptive sequencing M Marquet, J Zöllkau, J Pastuschek, A Viehweger, E Schleußner, ... Scientific reports 12 (1), 4000, 2022 | 39 | 2022 |
| Assessing genetic diversity and similarity of 435 KPC-carrying plasmids C Brandt, A Viehweger, A Singh, MW Pletz, D Wibberg, J Kalinowski, ... Scientific reports 9 (1), 11223, 2019 | 31 | 2019 |
| What the Phage: A scalable workflow for the identification and analysis of phage sequences M Marquet, M Hölzer, MW Pletz, A Viehweger, O Makarewicz, R Ehricht, ... Gigascience 11, giac110, 2022 | 22 | 2022 |
| Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN) R Van Damme, M Hölzer, A Viehweger, B Müller, E Bongcam-Rudloff, ... PLoS computational biology 17 (2), e1008716, 2021 | 22 | 2021 |
| Context-aware genomic surveillance reveals hidden transmission of a carbapenemase-producing Klebsiella pneumoniae A Viehweger, C Blumenscheit, N Lippmann, KL Wyres, C Brandt, JB Hans, ... Microbial genomics 7 (12), 000741, 2021 | 13 | 2021 |
| Chromosome-level genome assembly and transcriptome-based annotation of the oleaginous yeast Rhodotorula toruloides CBS 14 GC Martín-Hernández, B Müller, M Chmielarz, C Brandt, M Hölzer, ... Genomics 113 (6), 4022-4027, 2021 | 13 | 2021 |
| An encoding of genome content for machine learning A Viehweger, S Krautwurst, DH Parks, B König, M Marz Biorxiv, 524280, 2019 | 8 | 2019 |
| Is there a predictive value of EEG and MRI after a first afebrile seizure in children? W Tews, S Weise, S Syrbe, W Hirsch, A Viehweger, A Merkenschlager, ... Klinische Pädiatrie 227 (02), 84-88, 2015 | 8 | 2015 |
| Increased PCR screening capacity using a multi-replicate pooling scheme A Viehweger, F Kühnl, C Brandt, B König, AC Rodloff medRxiv, 2020.04. 16.20067603, 2020 | 7 | 2020 |
| Nanopore-based enrichment of antimicrobial resistance genes–a case-based study A Viehweger, M Marquet, M Hölzer, N Dietze, MW Pletz, C Brandt GigaByte 2023, 2023 | 5 | 2023 |
| Molecular epidemiology of SARS-CoV-2-a regional to global perspective C Brandt, R Spott, M Hölzer, D Kühnert, S Fuchs, M Lohde, M Marquet, ... MedRxiv, 2021.01. 25.21250447, 2021 | 5 | 2021 |
| Leclercia pneumoniae sp. nov., a bacterium isolated from clinical specimen in Leipzig, Germany M Hönemann, A Viehweger, N Dietze, J Johnke, AC Rodloff International Journal of Systematic and Evolutionary Microbiology 72 (3), 005293, 2022 | 3 | 2022 |
| Near Chromosome-Level Genome Assembly and Annotation of Rhodotorula babjevae Strains Reveals High Intraspecific Divergence GC Martín-Hernández, B Müller, C Brandt, M Hölzer, A Viehweger, ... Journal of Fungi 8 (4), 323, 2022 | 3 | 2022 |
| Nanopore sequencing for accurate bacterial outbreak tracing M Lohde, GE Wagner, J Dabernig-Heinz, A Viehweger, SD Braun, ... bioRxiv, 2023.09. 15.556300, 2023 | 2 | 2023 |
| SOP-Routine SARS-CoV-2 sequencing data administration M Jundzill, R Spott, M Lohde, M Hölzer, A Viehweger, C Brandt | 1 | 2023 |
| Create a MongoDB Atlas cluster M Jundzill, R Spott, M Lohde, M Hölzer, A Viehweger, C Brandt | 1 | 2023 |
| DarkQ: Continuous genomic monitoring using message queues A Viehweger, C Brandt, M Hölzer bioRxiv, 2020.11. 12.379560, 2020 | 1 | 2020 |
| Targeted decontamination of sequencing data with CLEAN M Lataretu, S Krautwurst, A Viehweger, C Brandt, M Hölzer bioRxiv, 2023.08. 05.552089, 2023 | | 2023 |
