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Renato Alves
Renato Alves
Verified email at embl.de
Title
Cited by
Cited by
Year
Extensive transmission of microbes along the gastrointestinal tract
TSB Schmidt, MR Hayward, LP Coelho, SS Li, PI Costea, AY Voigt, ...
eLife 8, e42693, 2019
4782019
Microbial abundance, activity and population genomic profiling with mOTUs2
A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ...
Nature communications 10 (1), 1014, 2019
4372019
The superfamily of heme–copper oxygen reductases: Types and evolutionary considerations
FL Sousa, RJ Alves, MA Ribeiro, JB Pereira-Leal, M Teixeira, MM Pereira
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1817 (4), 629-637, 2012
2162012
A faecal microbiota signature with high specificity for pancreatic cancer
E Kartal, TSB Schmidt, E Molina-Montes, S Rodríguez-Perales, J Wirbel, ...
Gut 71 (7), 1359-1372, 2022
1912022
Combinatorial, additive and dose-dependent drug–microbiome associations
SK Forslund, R Chakaroun, M Zimmermann-Kogadeeva, L Markó, ...
Nature 600 (7889), 500-505, 2021
1772021
Microbiome and metabolome features of the cardiometabolic disease spectrum
S Fromentin, SK Forslund, K Chechi, J Aron-Wisnewsky, R Chakaroun, ...
Nature medicine 28 (2), 303-314, 2022
1552022
A genomic signature and the identification of new sporulation genes
AB Abecasis, M Serrano, R Alves, L Quintais, JB Pereira-Leal, ...
Journal of bacteriology 195 (9), 2101-2115, 2013
1502013
Towards the biogeography of prokaryotic genes
LP Coelho, R Alves, ÁR Del Río, PN Myers, CP Cantalapiedra, ...
Nature 601 (7892), 252-256, 2022
1422022
Staphylococcus aureus Survives with a Minimal Peptidoglycan Synthesis Machine but Sacrifices Virulence and Antibiotic Resistance
P Reed, ML Atilano, R Alves, E Hoiczyk, X Sher, NT Reichmann, ...
Plos pathogens 11 (5), e1004891, 2015
1162015
Loss of genetic redundancy in reductive genome evolution
AG Mendonça, RJ Alves, JB Pereira-Leal
PLoS computational biology 7 (2), e1001082, 2011
992011
Antibiotics-induced monodominance of a novel gut bacterial order
F Hildebrand, L Moitinho-Silva, S Blasche, MT Jahn, TI Gossmann, ...
Gut 68 (10), 1781-1790, 2019
812019
Short linear motif candidates in the cell entry system used by SARS-CoV-2 and their potential therapeutic implications
B Mészáros, H Sámano-Sánchez, J Alvarado-Valverde, J Čalyševa, ...
Science signaling 14 (665), eabd0334, 2021
742021
NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language
LP Coelho, R Alves, P Monteiro, J Huerta-Cepas, AT Freitas, P Bork
Microbiome 7, 1-10, 2019
742019
A bioinformatics classifier and database for heme-copper oxygen reductases
FL Sousa, RJ Alves, JB Pereira-Leal, M Teixeira, MM Pereira
PLoS One 6 (4), e19117, 2011
672011
Bioinformatics projects supporting life-sciences learning in high schools
I Marques, P Almeida, R Alves, MJ Dias, A Godinho, JB Pereira-Leal
PLoS computational biology 10 (1), e1003404, 2014
332014
Microbial abundance, activity and population genomic profiling with mOTUs2. Nat Commun 10: 1014
A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ...
212019
Evidence of a causal and modifiable relationship between kidney function and circulating trimethylamine N-oxide
P Andrikopoulos, J Aron-Wisnewsky, R Chakaroun, A Myridakis, ...
Nature Communications 14 (1), 5843, 2023
182023
metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes
T Van Rossum, PI Costea, L Paoli, R Alves, R Thielemann, S Sunagawa, ...
Bioinformatics 38 (4), 1162-1164, 2022
162022
ELIXIR Software Management Plan for Life Sciences
R Alves, D Bampalikis, LJ Castro, JMF González, J Harrow, M Kuzak, ...
BioHackrXiv, 2021
132021
inTB-a data integration platform for molecular and clinical epidemiological analysis of tuberculosis
P Soares, RJ Alves, AB Abecasis, C Penha-Gonçalves, MGM Gomes, ...
BMC bioinformatics 14, 1-8, 2013
92013
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Articles 1–20