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Renato Alves
Renato Alves
Verified email at embl.de
Title
Cited by
Cited by
Year
Extensive transmission of microbes along the gastrointestinal tract
TSB Schmidt, MR Hayward, LP Coelho, SS Li, PI Costea, AY Voigt, ...
eLife 8, e42693, 2019
3972019
Microbial abundance, activity and population genomic profiling with mOTUs2
A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ...
Nature communications 10 (1), 1014, 2019
3632019
The superfamily of heme–copper oxygen reductases: Types and evolutionary considerations
FL Sousa, RJ Alves, MA Ribeiro, JB Pereira-Leal, M Teixeira, MM Pereira
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1817 (4), 629-637, 2012
2072012
A faecal microbiota signature with high specificity for pancreatic cancer
E Kartal, TSB Schmidt, E Molina-Montes, S Rodríguez-Perales, J Wirbel, ...
Gut 71 (7), 1359-1372, 2022
1392022
A genomic signature and the identification of new sporulation genes
AB Abecasis, M Serrano, R Alves, L Quintais, JB Pereira-Leal, ...
Journal of bacteriology 195 (9), 2101-2115, 2013
1382013
Combinatorial, additive and dose-dependent drug–microbiome associations
SK Forslund, R Chakaroun, M Zimmermann-Kogadeeva, L Markó, ...
Nature 600 (7889), 500-505, 2021
1312021
Microbiome and metabolome features of the cardiometabolic disease spectrum
S Fromentin, SK Forslund, K Chechi, J Aron-Wisnewsky, R Chakaroun, ...
Nature medicine 28 (2), 303-314, 2022
1252022
Staphylococcus aureus Survives with a Minimal Peptidoglycan Synthesis Machine but Sacrifices Virulence and Antibiotic Resistance
P Reed, ML Atilano, R Alves, E Hoiczyk, X Sher, NT Reichmann, ...
Plos pathogens 11 (5), e1004891, 2015
1062015
Towards the biogeography of prokaryotic genes
LP Coelho, R Alves, ÁR Del Río, PN Myers, CP Cantalapiedra, ...
Nature 601 (7892), 252-256, 2022
1052022
Loss of genetic redundancy in reductive genome evolution
AG Mendonça, RJ Alves, JB Pereira-Leal
PLoS computational biology 7 (2), e1001082, 2011
972011
Antibiotics-induced monodominance of a novel gut bacterial order
F Hildebrand, L Moitinho-Silva, S Blasche, MT Jahn, TI Gossmann, ...
Gut 68 (10), 1781-1790, 2019
712019
Short linear motif candidates in the cell entry system used by SARS-CoV-2 and their potential therapeutic implications
B Mészáros, H Sámano-Sánchez, J Alvarado-Valverde, J Čalyševa, ...
Science signaling 14 (665), eabd0334, 2021
692021
A bioinformatics classifier and database for heme-copper oxygen reductases
FL Sousa, RJ Alves, JB Pereira-Leal, M Teixeira, MM Pereira
PLoS One 6 (4), e19117, 2011
632011
NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language
LP Coelho, R Alves, P Monteiro, J Huerta-Cepas, AT Freitas, P Bork
Microbiome 7, 1-10, 2019
602019
Bioinformatics projects supporting life-sciences learning in high schools
I Marques, P Almeida, R Alves, MJ Dias, A Godinho, JB Pereira-Leal
PLoS computational biology 10 (1), e1003404, 2014
322014
Extensive transmission of microbes along the gastrointestinal tract. Elife 8
TS Schmidt, MR Hayward, LP Coelho, SS Li, PI Costea, AY Voigt, J Wirbel, ...
eLife Sciences Publications Ltd, 2019
182019
Microbial abundance, activity and population genomic profiling with mOTUs2. Nat Commun 10: 1014
A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ...
172019
metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes
T Van Rossum, PI Costea, L Paoli, R Alves, R Thielemann, S Sunagawa, ...
Bioinformatics 38 (4), 1162-1164, 2022
112022
ELIXIR Software Management Plan for Life Sciences
R Alves, D Bampalikis, LJ Castro, JMF González, J Harrow, M Kuzak, ...
BioHackrXiv, 2021
102021
inTB-a data integration platform for molecular and clinical epidemiological analysis of tuberculosis
P Soares, RJ Alves, AB Abecasis, C Penha-Gonçalves, MGM Gomes, ...
BMC bioinformatics 14, 1-8, 2013
92013
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