Kresten Lindorff-Larsen
Kresten Lindorff-Larsen
Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of Copenhagen
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Improved side‐chain torsion potentials for the Amber ff99SB protein force field
K Lindorff‐Larsen, S Piana, K Palmo, P Maragakis, JL Klepeis, RO Dror, ...
Proteins: Structure, Function, and Bioinformatics 78 (8), 1950-1958, 2010
How fast-folding proteins fold
K Lindorff-Larsen, S Piana, RO Dror, DE Shaw
Science 334 (6055), 517, 2011
Atomic-level characterization of the structural dynamics of proteins
DE Shaw, P Maragakis, K Lindorff-Larsen, S Piana, RO Dror, ...
Science 330 (6002), 341-346, 2010
Long-timescale molecular dynamics simulations of protein structure and function
JL Klepeis, K Lindorff-Larsen, RO Dror, DE Shaw
Current opinion in structural biology 19 (2), 120-127, 2009
How robust are protein folding simulations with respect to force field parameterization?
S Piana, K Lindorff-Larsen, DE Shaw
Biophysical journal 100 (9), L47-L49, 2011
Mapping long-range interactions in α-synuclein using spin-label NMR and ensemble molecular dynamics simulations
MM Dedmon, K Lindorff-Larsen, J Christodoulou, M Vendruscolo, ...
Journal of the American Chemical Society 127 (2), 476-477, 2005
Simultaneous determination of protein structure and dynamics
K Lindorff-Larsen, RB Best, MA DePristo, CM Dobson, M Vendruscolo
Nature 433 (7022), 128-132, 2005
Systematic validation of protein force fields against experimental data
K Lindorff-Larsen, P Maragakis, S Piana, MP Eastwood, RO Dror, ...
PloS one 7 (2), e32131, 2012
Millisecond-scale molecular dynamics simulations on Anton
DE Shaw, RO Dror, JK Salmon, JP Grossman, KM Mackenzie, JA Bank, ...
Proceedings of the conference on high performance computing networking …, 2009
Promoting transparency and reproducibility in enhanced molecular simulations
M Bonomi, G Bussi, C Camilloni, GA Tribello, P Banáš, A Barducci, ...
Nature methods 16 (8), 670-673, 2019
A structural biology community assessment of AlphaFold2 applications
M Akdel, DEV Pires, EP Pardo, J Jänes, AO Zalevsky, B Mészáros, ...
Nature Structural & Molecular Biology, 1-12, 2022
Principles of conduction and hydrophobic gating in K+ channels
MØ Jensen, DW Borhani, K Lindorff-Larsen, P Maragakis, V Jogini, ...
Proceedings of the National Academy of Sciences 107 (13), 5833-5838, 2010
The role of protein loops and linkers in conformational dynamics and allostery
E Papaleo, G Saladino, M Lambrughi, K Lindorff-Larsen, FL Gervasio, ...
Chemical reviews 116 (11), 6391-6423, 2016
Atomic-level description of ubiquitin folding
S Piana, K Lindorff-Larsen, DE Shaw
Proceedings of the National Academy of Sciences 110 (15), 5915-5920, 2013
Protein folding kinetics and thermodynamics from atomistic simulation
S Piana, K Lindorff-Larsen, DE Shaw
Proceedings of the National Academy of Sciences 109 (44), 17845-17850, 2012
Cancer mutations of the tumor suppressor SPOP disrupt the formation of active, phase-separated compartments
JJ Bouchard, JH Otero, DC Scott, E Szulc, EW Martin, N Sabri, D Granata, ...
Molecular cell 72 (1), 19-36. e8, 2018
Structure and dynamics of an unfolded protein examined by molecular dynamics simulation
K Lindorff-Larsen, N Trbovic, P Maragakis, S Piana, DE Shaw
Journal of the American Chemical Society 134 (8), 3787-3791, 2012
Biophysical experiments and biomolecular simulations: A perfect match?
S Bottaro, K Lindorff-Larsen
Science 361 (6400), 355-360, 2018
Microsecond molecular dynamics simulation shows effect of slow loop dynamics on backbone amide order parameters of proteins
P Maragakis, K Lindorff-Larsen, MP Eastwood, RO Dror, JL Klepeis, ...
The Journal of Physical Chemistry B 112 (19), 6155-6158, 2008
Parallel protein-unfolding pathways revealed and mapped
CF Wright, K Lindorff-Larsen, LG Randles, J Clarke
Nature Structural & Molecular Biology 10 (8), 658-662, 2003
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