Sonia Tarazona Campos
Sonia Tarazona Campos
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A survey of best practices for RNA-seq data analysis
A Conesa, P Madrigal, S Tarazona, D Gomez-Cabrero, A Cervera, ...
Genome biology 17 (1), 1-19, 2016
Differential expression in RNA-seq: a matter of depth
S Tarazona, F García-Alcalde, J Dopazo, A Ferrer, A Conesa
Genome research 21 (12), 2213-2223, 2011
Qualimap: evaluating next-generation sequencing alignment data
F García-Alcalde, K Okonechnikov, J Carbonell, LM Cruz, S Götz, ...
Bioinformatics 28 (20), 2678-2679, 2012
Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package
S Tarazona, P Furió-Tarí, D Turrà, AD Pietro, MJ Nueda, A Ferrer, ...
Nucleic acids research 43 (21), e140-e140, 2015
Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series
MJ Nueda, S Tarazona, A Conesa
Bioinformatics 30 (18), 2598-2602, 2014
Hypoxia promotes efficient differentiation of human embryonic stem cells to functional endothelium
S Prado-Lopez, A Conesa, A Armiñán, M Martínez-Losa, ...
Stem Cells 28 (3), 407-418, 2010
NOIseq: a RNA-seq differential expression method robust for sequencing depth biases
S Tarazona, F García, A Ferrer, J Dopazo, A Conesa
EMBnet. journal 17 (B), 18-19, 2011
PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data
R Hernández-de-Diego, S Tarazona, C Martínez-Mira, ...
Nucleic acids research 46 (W1), W503-W509, 2018
spongeScan: A web for detecting microRNA binding elements in lncRNA sequences
P Furió-Tarí, S Tarazona, T Gabaldón, AJ Enright, A Conesa
Nucleic acids research 44 (W1), W176-W180, 2016
Understanding disease mechanisms with models of signaling pathway activities
P Sebastian-Leon, E Vidal, P Minguez, A Conesa, S Tarazona, A Amadoz, ...
BMC systems biology 8 (1), 1-19, 2014
Tumor microenvironment-targeted poly-L-glutamic acid-based combination conjugate for enhanced triple negative breast cancer treatment
JJ Arroyo-Crespo, A Armiñán, D Charbonnier, L Balzano-Nogueira, ...
Biomaterials 186, 8-21, 2018
A multiway approach to data integration in systems biology based on Tucker3 and N-PLS
A Conesa, JM Prats-Montalbán, S Tarazona, MJ Nueda, A Ferrer
Chemometrics and Intelligent Laboratory Systems 104 (1), 101-111, 2010
Transcriptome modulation during host shift is driven by secondary metabolites in desert Drosophila
DN De Panis, J Padró, P Furió‐Tarí, S Tarazona, PS Milla Carmona, ...
Molecular ecology 25 (18), 4534-4550, 2016
Pathway network inference from gene expression data
I Ponzoni, MJ Nueda, S Tarazona, S Götz, D Montaner, JS Dussaut, ...
BMC systems biology 8 (2), 1-17, 2014
Functional assessment of time course microarray data
MJ Nueda, P Sebastián, S Tarazona, F García-García, J Dopazo, A Ferrer, ...
BMC bioinformatics 10 (6), 1-18, 2009
RNAseq analysis of Aspergillus fumigatus in blood reveals a just wait and see resting stage behavior
H Irmer, S Tarazona, C Sasse, P Olbermann, J Loeffler, S Krappmann, ...
BMC genomics 16 (1), 1-25, 2015
tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing
L de la Fuente, Á Arzalluz-Luque, M Tardáguila, H Del Risco, C Martí, ...
Genome biology 21 (1), 1-32, 2020
RGmatch: matching genomic regions to proximal genes in omics data integration
P Furió-Tarí, A Conesa, S Tarazona
BMC bioinformatics 17 (15), 1-10, 2016
STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse
D Gomez-Cabrero, S Tarazona, I Ferreirós-Vidal, RN Ramirez, ...
Scientific Data 6 (1), 1-15, 2019
Identification and visualization of differential isoform expression in RNA-seq time series
MJ Nueda, J Martorell-Marugan, C Martí, S Tarazona, A Conesa
Bioinformatics 34 (3), 524-526, 2018
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