Christian Schudoma
Christian Schudoma
Bioinformatics Cloud and Workflow Engineer
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An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations
BJ Clavijo, L Venturini, C Schudoma, GG Accinelli, G Kaithakottil, J Wright, ...
Genome research 27 (5), 885-896, 2017
Endogenous Arabidopsis messenger RNAs transported to distant tissues
CJ Thieme, M Rojas-Triana, E Stecyk, C Schudoma, W Zhang, L Yang, ...
Nature Plants 1 (4), 1-9, 2015
Plant immune and growth receptors share common signalling components but localise to distinct plasma membrane nanodomains
CA Bücherl, IK Jarsch, C Schudoma, C Segonzac, M Mbengue, ...
Elife 6, e25114, 2017
Cloning of the wheat Yr15 resistance gene sheds light on the plant tandem kinase-pseudokinase family
V Klymiuk, E Yaniv, L Huang, D Raats, A Fatiukha, S Chen, L Feng, ...
Nature communications 9 (1), 3735, 2018
Cracking the elusive alignment hypothesis: the microtubule–cellulose synthase nexus unraveled
M Bringmann, B Landrein, C Schudoma, O Hamant, MT Hauser, ...
Trends in plant science 17 (11), 666-674, 2012
Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions
PC Bailey, C Schudoma, W Jackson, E Baggs, G Dagdas, W Haerty, ...
Genome biology 19 (1), 1-18, 2018
Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins
P Durek, C Schudoma, W Weckwerth, J Selbig, D Walther
BMC bioinformatics 10, 1-17, 2009
Convergent loss of an EDS1/PAD4 signaling pathway in several plant lineages reveals coevolved components of plant immunity and drought response
EL Baggs, JG Monroe, AS Thanki, R O’Grady, C Schudoma, W Haerty, ...
The Plant Cell 32 (7), 2158-2177, 2020
Sequence–structure relationships in RNA loops: establishing the basis for loop homology modeling
C Schudoma, P May, V Nikiforova, D Walther
Nucleic acids research 38 (3), 970-980, 2010
Give It AGO: The Search for miRNA-Argonaute Sorting Signals in Arabidopsis thaliana Indicates a Relevance of Sequence Positions Other than the 5′-Position …
CJ Thieme, C Schudoma, P May, D Walther
Frontiers in plant science 3, 272, 2012
Comparison of efficiency and specificity of CRISPR-associated (Cas) nucleases in plants: an expanded toolkit for precision genome engineering
O Raitskin, C Schudoma, A West, NJ Patron
PLoS One 14 (2), e0211598, 2019
Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction
S Janssen, C Schudoma, G Steger, R Giegerich
BMC bioinformatics 12 (1), 1-19, 2011
Data management pipeline for plant phenotyping in a multisite project
K Billiau, H Sprenger, C Schudoma, D Walther, KI Köhl
Functional Plant Biology 39 (11), 948-957, 2012
Assessment of drought tolerance and its potential yield penalty in potato
H Sprenger, K Rudack, C Schudoma, A Neumann, S Seddig, R Peters, ...
Functional Plant Biology 42 (7), 655-667, 2015
Use of TILLING and robotised enzyme assays to generate an allelic series of Arabidopsis thaliana mutants with altered ADP-glucose pyrophosphorylase activity
N Hädrich, Y Gibon, C Schudoma, T Altmann, JE Lunn, M Stitt
Journal of plant physiology 168 (12), 1395-1405, 2011
An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes
BM Perez-Sepulveda, D Heavens, CV Pulford, AV Predeus, R Low, ...
Genome biology 22 (1), 1-18, 2021
A bioinformatics approach to distinguish plant parasite and host transcriptomes in interface tissue by classifying RNA-Seq reads
D Ikeue, C Schudoma, W Zhang, Y Ogata, T Sakamoto, T Kurata, ...
Plant Methods 11 (1), 1-16, 2015
Cloning of the wheat Yr15 resistance gene sheds light on the plant tandem kinase-pseudokinase family. Nat Commun 9: 3735
V Klymiuk, E Yaniv, L Huang, D Raats, A Fatiukha, S Chen, L Feng, ...
Modeling RNA loops using sequence homology and geometric constraints
C Schudoma, P May, D Walther
Bioinformatics 26 (13), 1671-1672, 2010
Conducting molecular biomarker discovery studies in plants
C Schudoma, M Steinfath, H Sprenger, JT van Dongen, D Hincha, ...
High-Throughput Phenotyping in Plants: Methods and Protocols, 127-150, 2012
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