Pavel Tomancak

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Stephan PreibischHHMI Janelia Research CampusVerified email at janelia.hhmi.org
Stephan SaalfeldHHMI Janelia Research CampusVerified email at janelia.hhmi.org
Albert CardonaMRC LMB and University of CambridgeVerified email at mrc-lmb.cam.ac.uk
Johannes SchindelinVerified email at wisc.edu
Jean-Yves TinevezResearch engineer, Institut Pasteur, Paris, FranceVerified email at pasteur.fr
Florian JugFondatione Human TechnopoleVerified email at fht.org
Gerald M. RubinJanelia Research Campus/HHMIVerified email at janelia.hhmi.org
Gene MyersMax-Planck Institute for Molecular Cell Biology & GeneticsVerified email at mpi-cbg.de
Jan HuiskenGeorg-August-University GöttingenVerified email at uni-goettingen.de
Anastasios PavlopoulosInstitute of Molecular Biology and Biotechnology (IMBB-FORTH)Verified email at imbb.forth.gr
Stephan W GrillMax Planck Institute of Molecular Cell Biology and GeneticsVerified email at mpi-cbg.de
Uwe OhlerProfessor, Max-Delbruck-Center & Humboldt University Berlin / Adjunct Professor, Duke UniversityVerified email at mdc-berlin.de
Benjamin P BermanAssociate Professor, The Hebrew University of Jerusalem School of MedicineVerified email at mail.huji.ac.il
Helena JamborTU DresdenVerified email at tu-dresden.de
Radoslaw Kamil EjsmontCRI, Paris, FranceVerified email at cri-paris.org
Caren NordenVerified email at igc.gulbenkian.pt
Mihail SarovHead of Genome Engineering, Max Planck Institute of Molecular Cell Biology and GeneticsVerified email at mpi-cbg.de
Iva KelavaSenior staff scientist at Welcome Sanger InstituteVerified email at sanger.ac.uk
Simon AlbertiTechnische Universität DresdenVerified email at tu-dresden.de
AA HymanMax Planck institute of molecular cell biology and geneticsVerified email at mpi-cbg.de

Pavel Tomancak

Research Group Leader at the Max Planck Institute of Molecular Cell Biology and Genetics in Dresden

Verified email at mpi-cbg.de - Homepage

evolutionary biology developmental biology imaging image analysis


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Fiji: an open-source platform for biological-image analysis J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Nature methods 9 (7), 676-682, 2012	45421	2012
Globally optimal stitching of tiled 3D microscopic image acquisitions S Preibisch, S Saalfeld, P Tomancak Bioinformatics 25 (11), 1463-1465, 2009	2127	2009
Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function E Lécuyer, H Yoshida, N Parthasarathy, C Alm, T Babak, T Cerovina, ... Cell 131 (1), 174-187, 2007	1051	2007
Computational identification of DrosophilamicroRNA genes EC Lai, P Tomancak, RW Williams, GM Rubin Genome biology 4 (7), 1-20, 2003	982	2003
TrakEM2 software for neural circuit reconstruction A Cardona, S Saalfeld, J Schindelin, I Arganda-Carreras, S Preibisch, ... PloS one 7 (6), e38011, 2012	858	2012
Systematic determination of patterns of gene expression during Drosophila embryogenesis P Tomancak, A Beaton, R Weiszmann, E Kwan, SQ Shu, SE Lewis, ... Genome biology 3, 1-14, 2002	799	2002
Content-aware image restoration: pushing the limits of fluorescence microscopy M Weigert, U Schmidt, T Boothe, A Müller, A Dibrov, A Jain, B Wilhelm, ... Nature methods 15 (12), 1090-1097, 2018	760	2018
RNA buffers the phase separation behavior of prion-like RNA binding proteins S Maharana, J Wang, DK Papadopoulos, D Richter, A Pozniakovsky, ... Science 360 (6391), 918-921, 2018	758	2018
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome BP Berman, Y Nibu, BD Pfeiffer, P Tomancak, SE Celniker, M Levine, ... Proceedings of the National Academy of Sciences 99 (2), 757-762, 2002	744	2002
Biological imaging software tools KW Eliceiri, MR Berthold, IG Goldberg, L Ibáñez, BS Manjunath, ... Nature methods 9 (7), 697-710, 2012	578	2012
Global analysis of patterns of gene expression during Drosophilaembryogenesis P Tomancak, BP Berman, A Beaton, R Weiszmann, E Kwan, ... Genome biology 8 (7), 1-24, 2007	497	2007
An objective comparison of cell-tracking algorithms V Ulman, M Maška, KEG Magnusson, O Ronneberger, C Haubold, ... Nature methods 14 (12), 1141-1152, 2017	471	2017
Gene expression divergence recapitulates the developmental hourglass model AT Kalinka, KM Varga, DT Gerrard, S Preibisch, DL Corcoran, J Jarrells, ... Nature 468 (7325), 811-814, 2010	446	2010
An Integrated Micro- and Macroarchitectural Analysis of the Drosophila Brain by Computer-Assisted Serial Section Electron Microscopy A Cardona, S Saalfeld, S Preibisch, B Schmid, A Cheng, J Pulokas, ... PLoS biology 8 (10), e1000502, 2010	409	2010
Software for bead-based registration of selective plane illumination microscopy data S Preibisch, S Saalfeld, J Schindelin, P Tomancak Nature methods 7 (6), 418-419, 2010	409	2010
Tissue clearing and its applications in neuroscience HR Ueda, A Ertürk, K Chung, V Gradinaru, A Chédotal, P Tomancak, ... Nature Reviews Neuroscience 21 (2), 61-79, 2020	342	2020
OpenSPIM: an open-access light-sheet microscopy platform PG Pitrone, J Schindelin, L Stuyvenberg, S Preibisch, M Weber, ... nature methods 10 (7), 598-599, 2013	335	2013
Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development AA Aboobaker, P Tomancak, N Patel, GM Rubin, EC Lai Proceedings of the National Academy of Sciences 102 (50), 18017-18022, 2005	323	2005
CATMAID: collaborative annotation toolkit for massive amounts of image data S Saalfeld, A Cardona, V Hartenstein, P Tomančák Bioinformatics 25 (15), 1984-1986, 2009	320	2009
Assessing phototoxicity in live fluorescence imaging PP Laissue, RA Alghamdi, P Tomancak, EG Reynaud, H Shroff Nature methods 14 (7), 657-661, 2017	309	2017

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