Pavel Tomancak
Title
Cited by
Cited by
Year
Fiji: an open-source platform for biological-image analysis
J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ...
Nature methods 9 (7), 676-682, 2012
233192012
Globally optimal stitching of tiled 3D microscopic image acquisitions
S Preibisch, S Saalfeld, P Tomancak
Bioinformatics 25 (11), 1463-1465, 2009
13712009
Computational identification of DrosophilamicroRNA genes
EC Lai, P Tomancak, RW Williams, GM Rubin
Genome biology 4 (7), R42, 2003
9192003
Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function
E Lécuyer, H Yoshida, N Parthasarathy, C Alm, T Babak, T Cerovina, ...
Cell 131 (1), 174-187, 2007
8642007
Systematic determination of patterns of gene expression during Drosophila embryogenesis
P Tomancak, A Beaton, R Weiszmann, E Kwan, SQ Shu, SE Lewis, ...
Genome biology 3 (12), research0088. 1, 2002
7062002
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome
BP Berman, Y Nibu, BD Pfeiffer, P Tomancak, SE Celniker, M Levine, ...
Proceedings of the National Academy of Sciences 99 (2), 757-762, 2002
7042002
TrakEM2 software for neural circuit reconstruction
A Cardona, S Saalfeld, J Schindelin, I Arganda-Carreras, S Preibisch, ...
PloS one 7 (6), e38011, 2012
5612012
Biological imaging software tools
KW Eliceiri, MR Berthold, IG Goldberg, L Ibáñez, BS Manjunath, ...
Nature methods 9 (7), 697, 2012
4732012
Global analysis of patterns of gene expression during Drosophilaembryogenesis
P Tomancak, BP Berman, A Beaton, R Weiszmann, E Kwan, ...
Genome biology 8 (7), R145, 2007
4202007
Gene expression divergence recapitulates the developmental hourglass model
AT Kalinka, KM Varga, DT Gerrard, S Preibisch, DL Corcoran, J Jarrells, ...
Nature 468 (7325), 811-814, 2010
3572010
An integrated micro-and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy
A Cardona, S Saalfeld, S Preibisch, B Schmid, A Cheng, J Pulokas, ...
PLoS Biol 8 (10), e1000502, 2010
3222010
Software for bead-based registration of selective plane illumination microscopy data
S Preibisch, S Saalfeld, J Schindelin, P Tomancak
Nature methods 7 (6), 418-419, 2010
3132010
Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development
AA Aboobaker, P Tomancak, N Patel, GM Rubin, EC Lai
Proceedings of the National Academy of Sciences 102 (50), 18017-18022, 2005
2922005
RNA buffers the phase separation behavior of prion-like RNA binding proteins
S Maharana, J Wang, DK Papadopoulos, D Richter, A Pozniakovsky, ...
Science 360 (6391), 918-921, 2018
2882018
Visualization of image data from cells to organisms
T Walter, DW Shattuck, R Baldock, ME Bastin, AE Carpenter, S Duce, ...
Nature methods 7 (3), S26-S41, 2010
2652010
OpenSPIM: an open-access light-sheet microscopy platform
PG Pitrone, J Schindelin, L Stuyvenberg, S Preibisch, M Weber, ...
nature methods 10 (7), 598-599, 2013
2252013
Content-aware image restoration: pushing the limits of fluorescence microscopy
M Weigert, U Schmidt, T Boothe, A Müller, A Dibrov, A Jain, B Wilhelm, ...
Nature methods 15 (12), 1090-1097, 2018
2152018
CATMAID: collaborative annotation toolkit for massive amounts of image data
S Saalfeld, A Cardona, V Hartenstein, P Tomančák
Bioinformatics 25 (15), 1984-1986, 2009
2152009
Elastic volume reconstruction from series of ultra-thin microscopy sections
S Saalfeld, R Fetter, A Cardona, P Tomancak
Nature methods 9 (7), 717-720, 2012
2042012
An objective comparison of cell-tracking algorithms
V Ulman, M Maška, KEG Magnusson, O Ronneberger, C Haubold, ...
Nature methods 14 (12), 1141-1152, 2017
1972017
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Articles 1–20