| The RAST Server: rapid annotations using subsystems technology RK Aziz, D Bartels, AA Best, M DeJongh, T Disz, RA Edwards, K Formsma, ... BMC genomics 9, 1-15, 2008 | 11628 | 2008 |
| The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) R Overbeek, R Olson, GD Pusch, GJ Olsen, JJ Davis, T Disz, RA Edwards, ... Nucleic acids research 42 (D1), D206-D214, 2014 | 4371 | 2014 |
| RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes T Brettin, JJ Davis, T Disz, RA Edwards, S Gerdes, GJ Olsen, R Olson, ... Scientific reports 5 (1), 1-6, 2015 | 2305 | 2015 |
| The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ... Nucleic acids research 33 (17), 5691-5702, 2005 | 2275 | 2005 |
| Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ... Nucleic acids research 45 (D1), D535-D542, 2017 | 1475 | 2017 |
| Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655 SY Gerdes, MD Scholle, JW Campbell, G Balazsi, E Ravasz, ... Journal of bacteriology 185 (19), 5673-5684, 2003 | 929 | 2003 |
| The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ... Nucleic acids research 48 (D1), D606-D612, 2020 | 822 | 2020 |
| From genetic footprinting to antimicrobial drug targets: examples in cofactor biosynthetic pathways SY Gerdes, MD Scholle, M D'Souza, A Bernal, MV Baev, M Farrell, ... Journal of Bacteriology 184 (16), 4555-4572, 2002 | 336 | 2002 |
| Whole-genome analysis of photosynthetic prokaryotes J Raymond, O Zhaxybayeva, JP Gogarten, SY Gerdes, RE Blankenship SCIENCE, 2002 | 316 | 2002 |
| Prokaryotic heme biosynthesis: multiple pathways to a common essential product HA Dailey, TA Dailey, S Gerdes, D Jahn, M Jahn, MR O'Brian, MJ Warren Microbiology and Molecular Biology Reviews 81 (1), 10.1128/mmbr. 00048-16, 2017 | 270 | 2017 |
| NAD biosynthesis: identification of the tryptophan to quinolinate pathway in bacteria O Kurnasov, V Goral, K Colabroy, S Gerdes, S Anantha, A Osterman, ... Chemistry & biology 10 (12), 1195-1204, 2003 | 255 | 2003 |
| Red death in Caenorhabditis elegans caused by Pseudomonas aeruginosa PAO1 A Zaborin, K Romanowski, S Gerdes, C Holbrook, F Lepine, J Long, ... Proceedings of the National Academy of Sciences 106 (15), 6327-6332, 2009 | 233 | 2009 |
| Evolution of proline biosynthesis: enzymology, bioinformatics, genetics, and transcriptional regulation Y Fichman, SY Gerdes, H Kovács, L Szabados, A Zilberstein, LN Csonka Biological Reviews 90 (4), 1065-1099, 2015 | 200 | 2015 |
| PATtyFams: protein families for the microbial genomes in the PATRIC database JJ Davis, S Gerdes, GJ Olsen, R Olson, GD Pusch, M Shukla, V Vonstein, ... Frontiers in microbiology 7, 118, 2016 | 167 | 2016 |
| Noncanonical coproporphyrin-dependent bacterial heme biosynthesis pathway that does not use protoporphyrin HA Dailey, S Gerdes, TA Dailey, JS Burch, JD Phillips Proceedings of the National Academy of Sciences 112 (7), 2210-2215, 2015 | 157 | 2015 |
| Essential genes on metabolic maps S Gerdes, R Edwards, M Kubal, M Fonstein, R Stevens, A Osterman Current opinion in biotechnology 17 (5), 448-456, 2006 | 136 | 2006 |
| The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation LK McNeil, C Reich, RK Aziz, D Bartels, M Cohoon, T Disz, RA Edwards, ... Nucleic acids research 35 (suppl_1), D347-D353, 2007 | 121 | 2007 |
| PATRIC as a unique resource for studying antimicrobial resistance DA Antonopoulos, R Assaf, RK Aziz, T Brettin, C Bun, N Conrad, JJ Davis, ... Briefings in bioinformatics 20 (4), 1094-1102, 2019 | 105 | 2019 |
| Ribosylnicotinamide kinase domain of NadR protein: identification and implications in NAD biosynthesis OV Kurnasov, BM Polanuyer, S Ananta, R Sloutsky, A Tam, SY Gerdes, ... Journal of bacteriology 184 (24), 6906-6917, 2002 | 102 | 2002 |
| Plant B vitamin pathways and their compartmentation: a guide for the perplexed S Gerdes, C Lerma-Ortiz, O Frelin, SMD Seaver, CS Henry, ... Journal of experimental botany 63 (15), 5379-5395, 2012 | 98 | 2012 |
Andrei OstermanSanford Burnham Prebys Medical Discovery InstVerified email at sbpdiscovery.org
