Rónán Daly
Rónán Daly
Head of Data Analysis, University of Glasgow Polyomics
Bestätigte E-Mail-Adresse bei glasgow.ac.uk
Titel
Zitiert von
Zitiert von
Jahr
Learning Bayesian networks: Approaches and issues
R Daly, Q Shen, S Aitken
The Knowledge Engineering Review 26 (2), 99-157, 2011
3672011
Learning Bayesian network equivalence classes with ant colony optimization
R Daly, Q Shen
Journal of Artificial Intelligence Research 35, 391-447, 2009
852009
MetAssign: probabilistic annotation of metabolites from LC–MS data using a Bayesian clustering approach
R Daly, S Rogers, J Wandy, A Jankevics, KEV Burgess, R Breitling
Bioinformatics 30 (19), 2764-2771, 2014
562014
Ms2lda. org: web-based topic modelling for substructure discovery in mass spectrometry
J Wandy, Y Zhu, JJJ van der Hooft, R Daly, MP Barrett, S Rogers
Bioinformatics 34 (2), 317-318, 2018
382018
Methods to accelerate the learning of bayesian network structures
R Daly, Q Shen
UK workshop on Computational Intelligence, 2007
312007
PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data
Y Gloaguen, F Morton, R Daly, R Gurden, S Rogers, J Wandy, D Wilson, ...
Bioinformatics 33 (24), 4007-4009, 2017
282017
Metabolomics identifies multiple candidate biomarkers to diagnose and stage human African trypanosomiasis
IM Vincent, R Daly, B Courtioux, AM Cattanach, S Biéler, JM Ndung’u, ...
PLoS neglected tropical diseases 10 (12), e0005140, 2016
222016
The Renilla luciferase gene as a reference gene for normalization of gene expression in transiently transfected cells
M Jiwaji, R Daly, K Pansare, P McLean, J Yang, W Kolch, AR Pitt
BMC molecular biology 11 (1), 1-12, 2010
212010
MetaNetter 2: A Cytoscape plugin for ab initio network analysis and metabolite feature classification
KEV Burgess, Y Borutzki, N Rankin, R Daly, F Jourdan
Journal of Chromatography B 1071, 68-74, 2017
182017
Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets
J Wandy, R Daly, R Breitling, S Rogers
Bioinformatics 31 (12), 1999-2006, 2015
142015
Using Higher-Order Dynamic Bayesian Networks to Model Periodic Data from the Circadian Clock of Arabidopsis Thaliana
R Daly, K Edwards, J O’Neill, S Aitken, A Millar, M Girolami
Proceedings of the Fourth IAPR International Conference on Pattern …, 2009
132009
Using Ant Colony Optimisation in Learning Bayesian Network Equivalence Classes
R Daly, Q Shen, S Aitken
UK Workshop on Computational Intelligence, 111-118, 2006
132006
Quantification of functionalised gold nanoparticle-targeted knockdown of gene expression in HeLa cells
M Jiwaji, ME Sandison, J Reboud, R Stevenson, R Daly, G Barkess, ...
PloS one 9 (6), e99458, 2014
112014
In silico optimization of mass spectrometry fragmentation strategies in metabolomics
J Wandy, V Davies, J JJ van der Hooft, S Weidt, R Daly, S Rogers
Metabolites 9 (10), 219, 2019
92019
Changes in plasma itaconate elevation in early rheumatoid arthritis patients elucidates disease activity associated macrophage activation
R Daly, G Blackburn, C Best, CS Goodyear, M Mudaliar, K Burgess, ...
Metabolites 10 (6), 241, 2020
82020
Ranking metabolite sets by their activity levels
K McLuskey, J Wandy, I Vincent, JJJ Van Der Hooft, S Rogers, K Burgess, ...
Metabolites 11 (2), 103, 2021
6*2021
Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions
SR Grimur Hjorleifsson Eldjarn, Andrew Ramsey, Justin JJ van der Hooft ...
PLOS Computational Biology, 2021
5*2021
Speeding up the learning of equivalence classes of Bayesian network structures
R Daly, S Aitken, Q Shen
42006
Changing environments and genetic variation: natural variation in inbreeding does not compromise short-term physiological responses
J Buckley, R Daly, CA Cobbold, K Burgess, BK Mable
Proceedings of the Royal Society B 286 (1915), 20192109, 2019
3*2019
MetaboCraft: building a Minecraft plugin for metabolomics
A Megalios, R Daly, K Burgess
Bioinformatics 34 (15), 2693-2694, 2018
32018
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