Richard Cote
Richard Cote
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The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013
JA Vizcaíno, RG Côté, A Csordas, JA Dianes, A Fabregat, JM Foster, ...
Nucleic acids research 41 (D1), D1063-D1069, 2012
PRIDE: a public repository of protein and peptide identifications for the proteomics community
P Jones, RG Côté, L Martens, AF Quinn, CF Taylor, W Derache, ...
Nucleic acids research 34 (suppl_1), D659-D663, 2006
The proteomics identifications database: 2010 update
JA Vizcaíno, R Côté, F Reisinger, H Barsnes, JM Foster, J Rameseder, ...
Nucleic acids research 38 (suppl 1), D736-D742, 2010
A guide to the Proteomics Identifications Database proteomics data repository
JA Vizcaíno, R Côté, F Reisinger, J M Foster, M Mueller, J Rameseder, ...
Proteomics 9 (18), 4276-4283, 2009
The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries
R Côté, P Jones, R Apweiler, H Hermjakob
Bmc Bioinformatics 7 (1), 97, 2006
PRIDE: new developments and new datasets
P Jones, RG Côté, SY Cho, S Klie, L Martens, AF Quinn, D Thorneycroft, ...
Nucleic acids research 36 (suppl 1), D878-D883, 2008
The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases
R Côté, P Jones, L Martens, S Kerrien, F Reisinger, Q Lin, R Leinonen, ...
BMC bioinformatics 8 (1), 401, 2007
PRIDE Inspector: a tool to visualize and validate MS proteomics data
R Wang, A Fabregat, D Ríos, D Ovelleiro, JM Foster, RG Côté, J Griss, ...
Nature biotechnology 30 (2), 135-137, 2012
The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium
RG Côté, J Griss, JA Dianes, R Wang, JC Wright, HWP van den Toorn, ...
Molecular & Cellular Proteomics 11 (12), 1682-1689, 2012
The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium
RG Côté, J Griss, JA Dianes, R Wang, JC Wright, HWP van den Toorn, ...
Molecular & Cellular Proteomics 11 (12), 1682-1689, 2012
The Ontology Lookup Service: bigger and better
R Côté, F Reisinger, L Martens, H Barsnes, JA Vizcaino, H Hermjakob
Nucleic acids research 38 (suppl 2), W155-W160, 2010
The Ontology Lookup Service: more data and better tools for controlled vocabulary queries
RG Côté, P Jones, L Martens, R Apweiler, H Hermjakob
Nucleic acids research 36 (suppl_2), W372-W376, 2008
jmzML, an open‐source Java API for mzML, the PSI standard for MS data
RG Côté, F Reisinger, L Martens
Proteomics 10 (7), 1332-1335, 2010
Analyzing large-scale proteomics projects with latent semantic indexing
S Klie, L Martens, JA Vizcaíno, R Côté, P Jones, R Apweiler, A Hinneburg, ...
Journal of proteome research 7 (01), 182-191, 2007
Experience using web services for biological sequence analysis
H Stockinger, T Attwood, SN Chohan, R Côté, P Cudré-Mauroux, ...
Briefings in bioinformatics 9 (6), 493-505, 2008
Improvements in the protein identifier cross-reference service
SP Wein, RG Côté, M Dumousseau, F Reisinger, H Hermjakob, ...
Nucleic acids research 40 (W1), W276-W280, 2012
The PRIDE proteomics identifications database: data submission, query, and dataset comparison
P Jones, R Cˆote
Methods Mol Biol 484, 287-303, 2008
Published and perished? The influence of the searched protein database on the long-term storage of proteomics data
J Griss, RG Côté, C Gerner, H Hermjakob, JA Vizcaíno
Molecular & Cellular Proteomics 10 (9), 2011
ISPIDER Central: an integrated database web-server for proteomics
JA Siepen, K Belhajjame, JN Selley, SM Embury, NW Paton, CA Goble, ...
Nucleic acids research 36 (suppl_2), W485-W490, 2008
Analysis of the experimental detection of central nervous system‐related genes in human brain and cerebrospinal fluid datasets
M Mueller, JA Vizcaíno, P Jones, R Côté, D Thorneycroft, R Apweiler, ...
Proteomics 8 (6), 1138-1148, 2008
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