| COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology D Domingo-Fernández, S Baksi, B Schultz, Y Gadiya, R Karki, T Raschka, ... Bioinformatics 37 (9), 1332-1334, 2021 | 114 | 2021 |
| The FAIR Cookbook-the essential resource for and by FAIR doers P Rocca-Serra, W Gu, V Ioannidis, T Abbassi-Daloii, S Capella-Gutierrez, ... Scientific data 10 (1), 292, 2023 | 20 | 2023 |
| Linking COVID-19 and heme-driven pathophysiologies: A combined computational–experimental approach MT Hopp, D Domingo-Fernández, Y Gadiya, MS Detzel, R Graf, ... Biomolecules 11 (5), 644, 2021 | 19 | 2021 |
| A method for the rational selection of drug repurposing candidates from multimodal knowledge harmonization B Schultz, A Zaliani, C Ebeling, J Reinshagen, D Bojkova, ... Scientific reports 11 (1), 11049, 2021 | 12 | 2021 |
| Data-driven modeling of knowledge assemblies in understanding comorbidity between type 2 diabetes mellitus and Alzheimer’s Disease R Karki, S Madan, Y Gadiya, D Domingo-Fernández, M Hofmann-Apitius Journal of Alzheimer's Disease 78 (1), 87-95, 2020 | 12 | 2020 |
| Comprehensive fragment screening of the SARS‐CoV‐2 proteome explores novel chemical space for drug development H Berg, MA Wirtz Martin, N Altincekic, I Alshamleh, J Kaur Bains, ... Angewandte Chemie International Edition 61 (46), e202205858, 2022 | 11 | 2022 |
| Unravelling the debate on heme effects in COVID-19 infections MT Hopp, D Domingo-Fernández, Y Gadiya, MS Detzel, BF Schmalohr, ... bioRxiv, 2020.06. 09.142125, 2020 | 10 | 2020 |
| PEMT: a patent enrichment tool for drug discovery Y Gadiya, A Zaliani, P Gribbon, M Hofmann-Apitius Bioinformatics 39 (1), btac716, 2023 | 9 | 2023 |
| Selection of data sets for FAIRification in drug discovery and development: Which, why, and how? E Alharbi, Y Gadiya, D Henderson, A Zaliani, A Delfin-Rossaro, ... Drug discovery today 27 (8), 2080-2085, 2022 | 9 | 2022 |
| Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures for drug discovery D Domingo-Fernández, Y Gadiya, A Patel, S Mubeen, D Rivas-Barragan, ... PLoS computational biology 18 (2), e1009909, 2022 | 9 | 2022 |
| FAIR in action-a flexible framework to guide FAIRification D Welter, N Juty, P Rocca-Serra, F Xu, D Henderson, W Gu, J Strubel, ... Scientific data 10 (1), 291, 2023 | 8 | 2023 |
| Modern drug discovery using ethnobotany: a large-scale cross-cultural analysis of traditional medicine reveals common therapeutic uses D Domingo-Fernández, Y Gadiya, S Mubeen, TJ Bollerman, MD Healy, ... Iscience 26 (9), 2023 | 6 | 2023 |
| Ensembles of knowledge graph embedding models improve predictions for drug discovery D Rivas-Barragan, D Domingo-Fernández, Y Gadiya, D Healey Briefings in Bioinformatics 23 (6), bbac481, 2022 | 6 | 2022 |
| Pharmaceutical patent landscaping: A novel approach to understand patents from the drug discovery perspective Y Gadiya, P Gribbon, M Hofmann-Apitius, A Zaliani Artificial Intelligence in the Life Sciences 3, 100069, 2023 | 5 | 2023 |
| SASC: A simple approach to synthetic cohorts for generating longitudinal observational patient cohorts from COVID-19 clinical data T Khorchani, Y Gadiya, G Witt, D Lanzillotta, C Claussen, A Zaliani Patterns 3 (4), 2022 | 5 | 2022 |
| Pharmacophore-Based Machine Learning Model To Predict Ligand Selectivity for E3 Ligase Binders R Karki, Y Gadiya, P Gribbon, A Zaliani ACS omega 8 (33), 30177-30185, 2023 | 4 | 2023 |
| DecoPath: a web application for decoding pathway enrichment analysis S Mubeen, VS Bharadhwaj, Y Gadiya, M Hofmann-Apitius, AT Kodamullil, ... NAR Genomics and Bioinformatics 3 (3), lqab087, 2021 | 4 | 2021 |
| The COVID-19 PHARMACOME: A method for the rational selection of drug repurposing candidates from multimodal knowledge harmonization B Schultz, A Zaliani, C Ebeling, J Reinshagen, D Bojkova, ... bioRxiv, 2020.09. 23.308239, 2020 | 4 | 2020 |
| Exploring the known chemical space of the plant kingdom: insights into taxonomic patterns, knowledge gaps, and bioactive regions D Domingo-Fernández, Y Gadiya, S Mubeen, D Healey, BH Norman, ... Journal of Cheminformatics 15 (1), 107, 2023 | 2 | 2023 |
| Mpox Knowledge Graph: a comprehensive representation embedding chemical entities and associated biology of Mpox R Karki, Y Gadiya, A Zaliani, P Gribbon Bioinformatics Advances 3 (1), vbad045, 2023 | 2 | 2023 |
Daniel Domingo-FernándezEnveda BiosciencesVerified email at envedabio.com
