| Coarse-graining of condensed phase and biomolecular systems GA Voth CRC press, 2008 | 756 | 2008 |
| A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning MY Tolstorukov, AV Colasanti, DM McCandlish, WK Olson, VB Zhurkin Journal of molecular biology 371 (3), 725-738, 2007 | 240 | 2007 |
| Analyzing and building nucleic acid structures with 3DNA AV Colasanti, XJ Lu, WK Olson JoVE (Journal of Visualized Experiments), e4401, 2013 | 61 | 2013 |
| Internucleosomal interactions mediated by histone tails allow distant communication in chromatin OI Kulaeva, G Zheng, YS Polikanov, AV Colasanti, N Clauvelin, ... Journal of Biological Chemistry 287 (24), 20248-20257, 2012 | 51 | 2012 |
| Properties of the nucleic-acid bases in free and Watson-Crick hydrogen-bonded states: computational insights into the sequence-dependent features of double-helical DNA AR Srinivasan, RR Sauers, MO Fenley, AH Boschitsch, A Matsumoto, ... Biophysical reviews 1, 13-20, 2009 | 44 | 2009 |
| Sequence-dependent variability of B-DNA: an update on bending and curvature T Ohyama, VB Zhurkin, MY Tolstorukov, F Xu, AV Colasanti, WK Olson DNA conformation and transcription, 18-34, 2005 | 44 | 2005 |
| Effects of noncanonical base pairing on RNA folding: structural context and spatial arrangements of G· A pairs WK Olson, S Li, T Kaukonen, AV Colasanti, Y Xin, XJ Lu Biochemistry 58 (20), 2474-2487, 2019 | 21 | 2019 |
| 3DNALandscapes: a database for exploring the conformational features of DNA G Zheng, AV Colasanti, XJ Lu, WK Olson Nucleic acids research 38 (suppl_1), D267-D274, 2010 | 21 | 2010 |
| DNA conformation and transcription VB Zhurkin, MY Tolstorukov, F Xu, AV Colasanti, WK Olson LANDES Bioscience, 18-34, 2005 | 20 | 2005 |
| Insights into the sequence-dependent macromolecular properties of DNA from base-pair level modeling WK Olson, AV Colasanti, L Czapla, G Zheng Coarse-graining of condensed phase and biomolecular systems, 205-223, 2008 | 18 | 2008 |
| DNA simulation benchmarks as revealed by X-ray structures WK Olson, AV Colasanti, Y Li, W Ge, G Zheng, VB Zhurkin Computational Studies of RNA and DNA, 235-257, 2006 | 16 | 2006 |
| Insights into gene expression and packaging from computer simulations WK Olson, N Clauvelin, AV Colasanti, G Singh, G Zheng Biophysical reviews 4, 171-178, 2012 | 13 | 2012 |
| Weak operator binding enhances simulated lac repressor‐mediated DNA looping AV Colasanti, MA Grosner, PJ Perez, N Clauvelin, XJ Lu, WK Olson Biopolymers 99 (12), 1070-1081, 2013 | 12 | 2013 |
| What controls DNA looping? PJ Perez, N Clauvelin, MA Grosner, AV Colasanti, WK Olson International journal of molecular sciences 15 (9), 15090-15108, 2014 | 11 | 2014 |
| Long-range effects of histone point mutations on DNA remodeling revealed from computational analyses of SIN-mutant nucleosome structures F Xu, AV Colasanti, Y Li, WK Olson Nucleic acids research 38 (20), 6872-6882, 2010 | 11 | 2010 |
| Watson–Crick base pairs: Character and recognition WK Olson, AV Colasanti, XJ Lu, VB Zhurkin Wiley Encyclopedia of Chemical Biology, 2008 | 4 | 2008 |
| DNA biomechanics WK Olson, AR Srinivasan, AV Colasanti, G Zheng, D Swigon digital Encyclopedia of Applied Physics, 2003 | 4 | 2003 |
| Pulling and pushing the DNA double helix WK Olson, KM Kosikov, A Colasanti, AA Gorin, VB Zhurkin AIP Conference Proceedings 487 (1), 14-36, 1999 | 4 | 1999 |
| Insights into DNA helical transitions found in protein-DNA complexes AV Colasanti, Y Li, G Singh, XJUN LU, WK Olson Biomolecular Forms and Functions: A Celebration of 50 Years of the …, 2013 | 3 | 2013 |
| Dynamics of the nucleosome core particle revealed from a new database of high resolution X-ray crystallographic and simulated structures G Singh, AV Colasanti, N Clauvelin, WK Olson JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 31, 34-35, 2013 | | 2013 |
