Bas van Breukelen
Bas van Breukelen
Assistant Professor, Biomolecular Mass Spectrometry and Proteomics Group, Utrecht University
Verified email at veluwestraat.nl
Title
Cited by
Cited by
Year
Highly Robust, Automated, and Sensitive Online TiO2-Based Phosphoproteomics Applied To Study Endogenous Phosphorylation in Drosophila melanogaster
MWH Pinkse, S Mohammed, JW Gouw, B van Breukelen, HR Vos, ...
Journal of proteome research 7 (2), 687-697, 2008
1972008
In-depth qualitative and quantitative profiling of tyrosine phosphorylation using a combination of phosphopeptide immunoaffinity purification and stable isotope dimethyl labeling
PJ Boersema, LY Foong, VMY Ding, S Lemeer, B van Breukelen, R Philp, ...
Molecular & Cellular Proteomics 9 (1), 84-99, 2010
1792010
Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes
MJL de Groot, P Daran-Lapujade, B van Breukelen, TA Knijnenburg, ...
Microbiology 153 (11), 3864-3878, 2007
1242007
Profiling of N-acetylated protein termini provides in-depth insights into the N-terminal nature of the proteome
AO Helbig, S Gauci, R Raijmakers, B van Breukelen, M Slijper, ...
Molecular & Cellular Proteomics 9 (5), 928-939, 2010
1222010
Current challenges in software solutions for mass spectrometry-based quantitative proteomics
S Cappadona, PR Baker, PR Cutillas, AJR Heck, B van Breukelen
Amino acids 43 (3), 1087-1108, 2012
1172012
Analysis of the cGMP/cAMP interactome using a chemical proteomics approach in mammalian heart tissue validates sphingosine kinase type 1-interacting protein as a genuine and …
A Scholten, MK Poh, TAB van Veen, B van Breukelen, MA Vos, AJR Heck
Journal of proteome research 5 (6), 1435-1447, 2006
1132006
Quantitative and qualitative proteome characteristics extracted from in-depth integrated genomics and proteomics analysis
TY Low, S van Heesch, H van den Toorn, P Giansanti, A Cristobal, ...
Cell reports 5 (5), 1469-1478, 2013
1102013
The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium
RG Côté, J Griss, JA Dianes, R Wang, JC Wright, HWP van den Toorn, ...
Molecular & Cellular Proteomics 11 (12), 1682-1689, 2012
972012
Targeted analysis of protein termini
W Dormeyer, S Mohammed, B Breukelen, J Krijgsveld, AJR Heck
Journal of proteome research 6 (12), 4634-4645, 2007
922007
The Rep protein of adeno-associated virus type 2 interacts with single-stranded DNA-binding proteins that enhance viral replication
TH Stracker, GD Cassell, P Ward, YM Loo, B Van Breukelen, ...
Journal of virology 78 (1), 441-453, 2004
852004
Online Automated in Vivo Zebrafish Phosphoproteomics: From Large-Scale Analysis Down to a Single Embryo
S Lemeer, MWH Pinkse, S Mohammed, B van Breukelen, J den Hertog, ...
Journal of proteome research 7 (4), 1555-1564, 2008
842008
Improving SRM assay development: a global comparison between triple quadrupole, ion trap, and higher energy CID peptide fragmentation spectra
EL de Graaf, AFM Altelaar, B van Breukelen, S Mohammed, AJR Heck
Journal of proteome research 10 (9), 4334-4341, 2011
762011
Protease bias in absolute protein quantitation
M Peng, N Taouatas, S Cappadona, B Van Breukelen, S Mohammed, ...
Nature methods 9 (6), 524-525, 2012
742012
Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes
J Boekhorst, B van Breukelen, AJR Heck, B Snel
Genome biology 9 (10), R144, 2008
742008
An augmented multiple-protease-based human phosphopeptide atlas
P Giansanti, TT Aye, H van den Toorn, M Peng, B van Breukelen, ...
Cell reports 11 (11), 1834-1843, 2015
732015
Perturbation of the yeast N-acetyltransferase NatB induces elevation of protein phosphorylation levels
AO Helbig, S Rosati, PWWM Pijnappel, B van Breukelen, MHTH Timmers, ...
BMC genomics 11 (1), 685, 2010
662010
Daily rhythms in the cyanobacterium synechococcus elongatus probed by high-resolution mass spectrometry–based proteomics reveals a small defined set of cyclic proteins
ACL Guerreiro, M Benevento, R Lehmann, B van Breukelen, H Post, ...
Molecular & cellular proteomics 13 (8), 2042-2055, 2014
562014
A versatile peptide pI calculator for phosphorylated and N‐terminal acetylated peptides experimentally tested using peptide isoelectric focusing
S Gauci, B Van Breukelen, SM Lemeer, J Krijgsveld, AJR Heck
Proteomics 8 (23‐24), 4898-4906, 2008
532008
Facilitating protein disulfide mapping by a combination of pepsin digestion, electron transfer higher energy dissociation (EThcD), and a dedicated search algorithm SlinkS
F Liu, B van Breukelen, AJR Heck
Molecular & Cellular Proteomics 13 (10), 2776-2786, 2014
522014
Resolving stoichiometries and oligomeric states of glutamate synthase protein complexes with curve fitting and simulation of electrospray mass spectra
B van Breukelen, A Barendregt, AJR Heck, RHH van den Heuvel
Rapid Communications in Mass Spectrometry: An International Journal Devoted …, 2006
482006
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