| ROCR: visualizing classifier performance in R T Sing, O Sander, N Beerenwinkel, T Lengauer Bioinformatics 21 (20), 3940-3941, 2005 | 3054 | 2005 |
| Comparative lesion sequencing provides insights into tumor evolution S Jones, W Chen, G Parmigiani, F Diehl, N Beerenwinkel, T Antal, ... Proceedings of the National Academy of Sciences 105 (11), 4283-4288, 2008 | 881 | 2008 |
| Neutrophils escort circulating tumour cells to enable cell cycle progression BM Szczerba, F Castro-Giner, M Vetter, I Krol, S Gkountela, J Landin, ... Nature 566 (7745), 553-557, 2019 | 619 | 2019 |
| Eleven grand challenges in single-cell data science D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ... Genome Biology 21 (1), 1-35, 2020 | 502 | 2020 |
| Genetic progression and the waiting time to cancer N Beerenwinkel, T Antal, D Dingli, A Traulsen, KW Kinzler, VE Velculescu, ... PLoS Computational Biology 3 (11), e225, 2007 | 471 | 2007 |
| Geno2pheno: Estimating phenotypic drug resistance from HIV-1 genotypes N Beerenwinkel, M Däumer, M Oette, K Korn, D Hoffmann, R Kaiser, ... Nucleic Acids Research 31 (13), 3850-3855, 2003 | 365 | 2003 |
| Microbiome interactions shape host fitness AL Gould, V Zhang, L Lamberti, EW Jones, B Obadia, N Korasidis, ... Proceedings of the National Academy of Sciences 115 (51), E11951-E11960, 2018 | 328 | 2018 |
| Cancer evolution: mathematical models and computational inference N Beerenwinkel, RF Schwarz, M Gerstung, F Markowetz Systematic Biology 64 (1), e1-e25, 2015 | 322 | 2015 |
| ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data O Zagordi, A Bhattacharya, N Eriksson, N Beerenwinkel BMC Bioinformatics 12 (1), 119, 2011 | 293 | 2011 |
| Diversity and complexity of HIV-1 drug resistance: a bioinformatics approach to predicting phenotype from genotype N Beerenwinkel, B Schmidt, H Walter, R Kaiser, T Lengauer, D Hoffmann, ... Proceedings of the National Academy of Sciences 99 (12), 8271-8276, 2002 | 286 | 2002 |
| Viral population estimation using pyrosequencing N Eriksson, L Pachter, Y Mitsuya, SY Rhee, C Wang, B Gharizadeh, ... PLoS computational biology 4 (5), e1000074, 2008 | 277 | 2008 |
| Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies O Zagordi, R Klein, M Däumer, N Beerenwinkel Nucleic Acids Research 38 (21), 7400-7409, 2010 | 262 | 2010 |
| Reliable detection of subclonal single-nucleotide variants in tumour cell populations M Gerstung, C Beisel, M Rechsteiner, P Wild, P Schraml, H Moch, ... Nature Communications 3, 811, 2012 | 257 | 2012 |
| Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data N Beerenwinkel, HF Günthard, V Roth, KJ Metzner Frontiers in Microbiology 3, 329, 2012 | 252 | 2012 |
| Tree inference for single-cell data K Jahn, J Kuipers, N Beerenwinkel Genome Biology 17 (1), 86, 2016 | 237 | 2016 |
| From hype to reality: data science enabling personalized medicine H Fröhlich, R Balling, N Beerenwinkel, O Kohlbacher, S Kumar, ... BMC Medicine 16 (1), 150, 2018 | 234 | 2018 |
| ROCR: Visualizing the performance of scoring classifiers T Sing, O Sander, N Beerenwinkel, T Lengauer R package version 1 (7), 2009 | 230 | 2009 |
| Ultra-deep sequencing for the analysis of viral populations N Beerenwinkel, O Zagordi Current Opinion in Virology 1 (5), 413-418, 2011 | 207 | 2011 |
| Predicting HIV coreceptor usage on the basis of genetic and clinical covariates T Sing, AJ Low, N Beerenwinkel, O Sander, PK Cheung, FS Domingues, ... Antiviral Therapy 12 (7), 1097, 2007 | 206 | 2007 |
| The common gut microbe Eubacterium hallii also contributes to intestinal propionate formation C Engels, HJ Ruscheweyh, N Beerenwinkel, C Lacroix, C Schwab Frontiers in Microbiology 7, 2016 | 185 | 2016 |
Jack KuipersETH ZurichVerified email at bsse.ethz.ch
