Jesper V. Olsen
Jesper V. Olsen
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Andromeda: a peptide search engine integrated into the MaxQuant environment
J Cox, N Neuhauser, A Michalski, RA Scheltema, JV Olsen, M Mann
Journal of proteome research 10 (4), 1794-1805, 2011
In-gel digestion for mass spectrometric characterization of proteins and proteomes
A Shevchenko, H Tomas, J Havli, JV Olsen, M Mann
Nature protocols 1 (6), 2856-2860, 2006
Lysine acetylation targets protein complexes and co-regulates major cellular functions
C Choudhary, C Kumar, F Gnad, ML Nielsen, M Rehman, TC Walther, ...
Science 325 (5942), 834-840, 2009
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
JV Olsen, B Blagoev, F Gnad, B Macek, C Kumar, P Mortensen, M Mann
Cell 127 (3), 635-648, 2006
Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap
JV Olsen, LMF de Godoy, G Li, B Macek, P Mortensen, R Pesch, ...
Molecular & cellular proteomics 4 (12), 2010-2021, 2005
Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis
JV Olsen, M Vermeulen, A Santamaria, C Kumar, ML Miller, LJ Jensen, ...
Sci Signal 2010 (3(104):ra3.), 2010
Trypsin cleaves exclusively C-terminal to arginine and lysine residues
JV Olsen, SE Ong, M Mann
Molecular & cellular proteomics 3 (6), 608-614, 2004
Higher-energy C-trap dissociation for peptide modification analysis
JV Olsen, B Macek, O Lange, A Makarov, S Horning, M Mann
Nature methods 4 (9), 709-712, 2007
Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria
VK Mootha, J Bunkenborg, JV Olsen, M Hjerrild, JR Wisniewski, E Stahl, ...
Cell 115 (5), 629-640, 2003
Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
LMF De Godoy, JV Olsen, J Cox, ML Nielsen, NC Hubner, F Fröhlich, ...
Nature 455 (7217), 1251-1254, 2008
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
L Orlando, A Ginolhac, G Zhang, D Froese, A Albrechtsen, M Stiller, ...
Nature 499 (7456), 74-78, 2013
Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway* S
A Gruhler, JV Olsen, S Mohammed, P Mortensen, NJ Færgeman, M Mann, ...
Molecular & cellular proteomics 4 (3), 310-327, 2005
A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics
J Cox, I Matic, M Hilger, N Nagaraj, M Selbach, JV Olsen, M Mann
Nature protocols 4 (5), 698-705, 2009
Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers
M Vermeulen, HC Eberl, F Matarese, H Marks, S Denissov, F Butter, ...
Cell 142 (6), 967-980, 2010
The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins
J Adachi, C Kumar, Y Zhang, JV Olsen, M Mann
Genome biology 7, 1-16, 2006
Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle
H Daub, JV Olsen, M Bairlein, F Gnad, FS Oppermann, R Körner, Z Greff, ...
Molecular cell 31 (3), 438-448, 2008
Pathogens and host immunity in the ancient human oral cavity
C Warinner, JFM Rodrigues, R Vyas, C Trachsel, N Shved, J Grossmann, ...
Nature genetics 46 (4), 336-344, 2014
Status of large-scale analysis of post-translational modifications by mass spectrometry
JV Olsen, M Mann
Molecular & cellular proteomics 12 (12), 3444-3452, 2013
A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed
JV Olsen, JC Schwartz, J Griep-Raming, ML Nielsen, E Damoc, ...
Molecular & cellular proteomics 8 (12), 2759-2769, 2009
Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns
A Lundby, K Lage, BT Weinert, DB Bekker-Jensen, A Secher, ...
Cell reports 2 (2), 419-431, 2012
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