Jonathan A. Eisen

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Guillaume Jospinbioinformatician at AnimalBiomeVerified email at animalbiome.com
David CoilUC DavisVerified email at ucdavis.edu
Aaron DarlingIndependentVerified email at illumina.com
Jenna Morgan LangPostdoc in the lab of Jonathan Eisen at UC DavisVerified email at lbl.gov
William (Bill) C. NelsonPacific Northwest National LaboratoryVerified email at pnnl.gov
Owen WhiteDirector of Bioinformatics, Institute for Genome Sciences, Professor, Department of Epidemiology and Preventative, University ofVerified email at som.umaryland.edu
Ian PaulsenProfessor, Macquarie UniversityVerified email at mq.edu.au
Naomi WardProfessor, Microbiology, Immunology, and Pathology, Colorado State UniversityVerified email at colostate.edu
Cassie EttingerComputational Biologist | Barnwell BioVerified email at barnwellbio.com
Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at jhu.edu
Martin WuUniversity of VirginiaVerified email at virginia.edu
Philip HugenholtzAustralian Centre for Ecogenomics, SCMB, The University of QueenslandVerified email at uq.edu.au
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryVerified email at lbl.gov
Douglas B RuschIndiana University BloomingtonVerified email at indiana.edu
Sean C. DaughertyUltragenyxVerified email at ultragenyx.com
Ramunas StepanauskasBigelow Laboratory for Ocean SciencesVerified email at bigelow.org
Jan-Fang ChengStaff Scientist, Lawrence Berkeley National LaboratoryVerified email at lbl.gov
Jessica L. GreenPhylagen, Inc.Verified email at phylagen.com
Frank RobbProfessor of Microbiology and Immunology, University of Maryland, BaltimoreVerified email at som.umaryland.edu
Marc T. FacciottiProfessor of Biomedical Engineering, University of California, DavisVerified email at ucdavis.edu

Jonathan A. Eisen

Professor, University of California, Davis (UC Davis), Department of Evolution and Ecology

Verified email at ucdavis.edu - Homepage

Phylogenomics Microbial Diversity Evolution Symbiosis Host-Microbe Interactions


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Analysis of the genome sequence of the flowering plant Arabidopsis thaliana Arabidopsis Genome Initiative genomeanalysis@ tgr. org genomeanalysis@ gsf. de nature 408 (6814), 796-815, 2000	11387	2000
Genome sequence of the human malaria parasite Plasmodium falciparum MJ Gardner, N Hall, E Fung, O White, M Berriman, RW Hyman, JM Carlton, ... Nature 419 (6906), 498-511, 2002	5577	2002
Environmental genome shotgun sequencing of the Sargasso Sea JC Venter, K Remington, JF Heidelberg, AL Halpern, D Rusch, JA Eisen, ... science 304 (5667), 66-74, 2004	5459	2004
Structure, variation, and assembly of the root-associated microbiomes of rice J Edwards, C Johnson, C Santos-Medellín, E Lurie, NK Podishetty, ... Proceedings of the National Academy of Sciences 112 (8), E911-E920, 2015	2592	2015
Insights into the phylogeny and coding potential of microbial dark matter C Rinke, P Schwientek, A Sczyrba, NN Ivanova, IJ Anderson, JF Cheng, ... Nature 499 (7459), 431-437, 2013	2510	2013
The Sorcerer II global ocean sampling expedition: northwest Atlantic through eastern tropical Pacific DB Rusch, AL Halpern, G Sutton, KB Heidelberg, S Williamson, ... PLoS biology 5 (3), 2007	2354	2007
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae JF Heidelberg, JA Eisen, WC Nelson, RA Clayton, ML Gwinn, RJ Dodson, ... Nature 406 (6795), 477-483, 2000	2259	2000
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ... Nature biotechnology 35 (8), 725-731, 2017	1868	2017
Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima KE Nelson, RA Clayton, SR Gill, ML Gwinn, RJ Dodson, DH Haft, ... Nature 399 (6734), 323-329, 1999	1833	1999
Complete genome sequence of a virulent isolate of Streptococcus pneumoniae H Tettelin, KE Nelson, IT Paulsen, JA Eisen, TD Read, S Peterson, ... Science 293 (5529), 498-506, 2001	1691	2001
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440 KE Nelson, C Weinel, IT Paulsen, RJ Dodson, H Hilbert, ... Environmental microbiology 4 (12), 799-808, 2002	1686	2002
Complete genome sequence of Neisseria meningitidis serogroup B strain MC58 H Tettelin, NJ Saunders, J Heidelberg, AC Jeffries, KE Nelson, JA Eisen, ... Science 287 (5459), 1809-1815, 2000	1417	2000
Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1 Science 286 (5444), 1571-1577, 1999	1226	1999
Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis IT Paulsen, L Banerjei, GSA Myers, KE Nelson, R Seshadri, TD Read, ... Science 299 (5615), 2071-2074, 2003	1143	2003
Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana X Lin, S Kaul, S Rounsley, TP Shea, MI Benito, CD Town, CY Fujii, ... Nature 402, 761-768, 1999	1129*	1999
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea D Wu, P Hugenholtz, K Mavromatis, R Pukall, E Dalin, NN Ivanova, ... Nature 462 (7276), 1056-1060, 2009	1097	2009
Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis JF Heidelberg, IT Paulsen, KE Nelson, EJ Gaidos, WC Nelson, TD Read, ... Nature Biotechnology 20, 1118-1123, 2002	1079	2002
The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families S Yooseph, G Sutton, DB Rusch, AL Halpern, SJ Williamson, ... PLoS biology 5 (3), 2007	1023	2007
Phylogenomics of the Reproductive Parasite Wolbachia pipientis wMel: A Streamlined Genome Overrun by Mobile Genetic Elements M Wu, LV Sun, J Vamathevan, M Riegler, R Deboy, JC Brownlie, ... PLoS biology 2 (3), e69, 2004	1010	2004
The Genome of the Natural Genetic Engineer Agrobacterium tumefaciens C58 DW Wood, JC Setubal, R Kaul, DE Monks, JP Kitajima, VK Okura, Y Zhou, ... science 294 (5550), 2317-2323, 2001	1010	2001

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