The landscape of genomic alterations across childhood cancers SN Gröbner, BC Worst, J Weischenfeldt, I Buchhalter, K Kleinheinz, ... Nature 555 (7696), 321-327, 2018 | 1493 | 2018 |
A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection S Hoffmann, C Otto, G Doose, A Tanzer, D Langenberger, S Christ, ... Genome biology 15, 1-11, 2014 | 308 | 2014 |
PROSO II–a new method for protein solubility prediction P Smialowski, G Doose, P Torkler, S Kaufmann, D Frishman The FEBS journal 279 (12), 2192-2200, 2012 | 244 | 2012 |
DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control H Kretzmer, SH Bernhart, W Wang, A Haake, MA Weniger, AK Bergmann, ... Nature genetics 47 (11), 1316-1325, 2015 | 151 | 2015 |
Genomic and transcriptomic changes complement each other in the pathogenesis of sporadic Burkitt lymphoma C López, K Kleinheinz, SM Aukema, M Rohde, SH Bernhart, ... Nature communications 10 (1), 1459, 2019 | 139 | 2019 |
Changes of bivalent chromatin coincide with increased expression of developmental genes in cancer SH Bernhart, H Kretzmer, LM Holdt, F Jühling, O Ammerpohl, ... Scientific reports 6 (1), 37393, 2016 | 130 | 2016 |
MINCR is a MYC-induced lncRNA able to modulate MYC’s transcriptional network in Burkitt lymphoma cells G Doose, A Haake, SH Bernhart, C López, S Duggimpudi, F Wojciech, ... Proceedings of the National Academy of Sciences 112 (38), E5261-E5270, 2015 | 108 | 2015 |
MYC/MIZ1-dependent gene repression inversely coordinates the circadian clock with cell cycle and proliferation A Shostak, B Ruppert, N Ha, P Bruns, UH Toprak, R Eils, M Schlesner, ... Nature communications 7 (1), 11807, 2016 | 106 | 2016 |
RNA-seq analysis identifies different transcriptomic types and developmental trajectories of primary melanomas M Kunz, H Löffler-Wirth, M Dannemann, E Willscher, G Doose, J Kelso, ... Oncogene 37 (47), 6136-6151, 2018 | 101 | 2018 |
The genomic and transcriptional landscape of primary central nervous system lymphoma J Radke, N Ishaque, R Koll, Z Gu, E Schumann, L Sieverling, S Uhrig, ... Nature Communications 13 (1), 2558, 2022 | 92 | 2022 |
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ... Scientific reports 6 (1), 34589, 2016 | 71 | 2016 |
Relevance of ID3-TCF3-CCND3 pathway mutations in pediatric aggressive B-cell lymphoma treated according to the non-Hodgkin Lymphoma Berlin-Frankfurt-Münster protocols M Rohde, BR Bonn, M Zimmermann, J Lange, A Möricke, W Klapper, ... Haematologica 102 (6), 1091, 2017 | 70 | 2017 |
Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas D Hübschmann, K Kleinheinz, R Wagener, SH Bernhart, C López, ... Leukemia 35 (7), 2002-2016, 2021 | 57 | 2021 |
Detection of atherosclerosis by small RNA-sequencing analysis of extracellular vesicle enriched serum samples A Hildebrandt, B Kirchner, AS Meidert, F Brandes, A Lindemann, G Doose, ... Frontiers in Cell and Developmental Biology 9, 729061, 2021 | 30 | 2021 |
The PCBP1 gene encoding poly(rc) binding protein i is recurrently mutated in Burkitt lymphoma R Wagener, SM Aukema, M Schlesner, A Haake, B Burkhardt, A Claviez, ... Genes, Chromosomes and Cancer 54 (9), 555-564, 2015 | 30 | 2015 |
Atypical RNAs in the coelacanth transcriptome A Nitsche, G Doose, H Tafer, M Robinson, NR Saha, M Gerdol, A Canapa, ... Journal of Experimental Zoology Part B: Molecular and Developmental …, 2014 | 24 | 2014 |
uap: reproducible and robust HTS data analysis C Kämpf, M Specht, A Scholz, SH Puppel, G Doose, K Reiche, J Schor, ... BMC bioinformatics 20, 1-9, 2019 | 21 | 2019 |
Mapping the RNA-Seq trash bin: unusual transcripts in prokaryotic transcriptome sequencing data G Doose, M Alexis, R Kirsch, S Findeiß, D Langenberger, R Machné, ... RNA biology 10 (7), 1204-1210, 2013 | 20 | 2013 |
Gene expression profile of human T cells following a single stimulation of peripheral blood mononuclear cells with anti-CD3 antibodies IG Sousa, KCR Simi, MM do Almo, MAG Bezerra, G Doose, T Raiol, ... BMC genomics 20, 1-14, 2019 | 17 | 2019 |
The trouble with long-range base pairs in RNA folding F Amman, SH Bernhart, G Doose, IL Hofacker, J Qin, PF Stadler, S Will Advances in Bioinformatics and Computational Biology: 8th Brazilian …, 2013 | 17 | 2013 |