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Jan-Hendrik Prinz
Jan-Hendrik Prinz
Memorial Sloan Kettering Cancer Center
Verified email at choderalab.org - Homepage
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Cited by
Cited by
Year
Markov models of molecular kinetics: Generation and validation
JH Prinz, H Wu, M Sarich, B Keller, M Senne, M Held, JD Chodera, ...
The Journal of chemical physics 134 (17), 2011
12662011
PyEMMA 2: A software package for estimation, validation, and analysis of Markov models
MK Scherer, B Trendelkamp-Schroer, F Paul, G Prez-Hernndez, ...
Journal of chemical theory and computation 11 (11), 5525-5542, 2015
9912015
Projected and hidden Markov models for calculating kinetics and metastable states of complex molecules
F No, H Wu, JH Prinz, N Plattner
The Journal of chemical physics 139 (18), 2013
1812013
Probing molecular kinetics with Markov models: metastable states, transition pathways and spectroscopic observables
JH Prinz, B Keller, F No
Physical Chemistry Chemical Physics 13 (38), 16912-16927, 2011
1242011
Mechanisms of protein-ligand association and its modulation by protein mutations
M Held, P Metzner, JH Prinz, F No
Biophysical journal 100 (3), 701-710, 2011
832011
Markov state models from short non-equilibrium simulations—Analysis and correction of estimation bias
F Nske, H Wu, JH Prinz, C Wehmeyer, C Clementi, F No
The Journal of Chemical Physics 146 (9), 2017
792017
Dynamical reweighting: Improved estimates of dynamical properties from simulations at multiple temperatures
JD Chodera, WC Swope, F No, JH Prinz, MR Shirts, VS Pande
The Journal of chemical physics 134 (24), 2011
792011
OpenPathSampling: A Python framework for path sampling simulations. 1. Basics
DWH Swenson, JH Prinz, F Noe, JD Chodera, PG Bolhuis
Journal of chemical theory and computation 15 (2), 813-836, 2018
72*2018
Markov models and dynamical fingerprints: Unraveling the complexity of molecular kinetics
BG Keller, JH Prinz, F No
Chemical Physics 396, 92-107, 2012
672012
Optimal use of data in parallel tempering simulations for the construction of discrete-state Markov models of biomolecular dynamics
JH Prinz, JD Chodera, VS Pande, WC Swope, JC Smith, F No
The Journal of chemical physics 134 (24), 2011
642011
Efficient computation, sensitivity, and error analysis of committor probabilities for complex dynamical processes
JH Prinz, M Held, JC Smith, F No
Multiscale Modeling & Simulation 9 (2), 545-567, 2011
412011
Spectral rate theory for two-state kinetics
JH Prinz, JD Chodera, F No
Physical Review X 4 (1), 011020, 2014
342014
Projected metastable Markov processes and their estimation with observable operator models
H Wu, JH Prinz, F No
The Journal of chemical physics 143 (14), 2015
282015
Dynamic neutron scattering from conformational dynamics. I. Theory and Markov models
B Lindner, Z Yi, JH Prinz, JC Smith, F No
The Journal of Chemical Physics 139 (17), 2013
272013
Dynamic neutron scattering from conformational dynamics. II. Application using molecular dynamics simulation and Markov modeling
Z Yi, B Lindner, JH Prinz, F No, JC Smith
The Journal of Chemical Physics 139 (17), 2013
142013
Markov model theory
M Sarich, JH Prinz, C Schtte
An introduction to Markov state models and their application to long…, 2014
122014
A robust approach to estimating rates from time-correlation functions
JD Chodera, PJ Elms, WC Swope, JH Prinz, S Marqusee, C Bustamante, ...
arXiv preprint arXiv:1108.2304, 2011
122011
Analysis of Markov models
F No, JH Prinz
An Introduction to Markov State Models and Their Application to Long…, 2014
52014
Estimation and validation of Markov models
JH Prinz, JD Chodera, F No
An Introduction to Markov State Models and Their Application to Long…, 2014
52014
Advanced estimation methods for Markov models of dynamical systems
JH Prinz
22013
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Articles 1–20