Hans-Joachim Ruscheweyh
Hans-Joachim Ruscheweyh
Bioinformatician, D-BIOL, ETH Zurich
Verified email at
Cited by
Cited by
Integrative analysis of environmental sequences using MEGAN4
DH Huson, S Mitra, HJ Ruscheweyh, N Weber, SC Schuster
Genome research 21 (9), 1552-1560, 2011
MEGAN community edition-interactive exploration and analysis of large-scale microbiome sequencing data
DH Huson, S Beier, I Flade, A Górska, M El-Hadidi, S Mitra, ...
PLoS computational biology 12 (6), e1004957, 2016
Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium
S Brugiroux, M Beutler, C Pfann, D Garzetti, HJ Ruscheweyh, D Ring, ...
Nature microbiology 2 (2), 1-12, 2016
Microbial abundance, activity and population genomic profiling with mOTUs2
A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ...
Nature communications 10 (1), 1-11, 2019
The common gut microbe Eubacterium hallii also contributes to intestinal propionate formation
C Engels, HJ Ruscheweyh, N Beerenwinkel, C Lacroix, C Schwab
Frontiers in microbiology 7, 713, 2016
Intestinal dysbiosis, barrier dysfunction, and bacterial translocation account for CKD–related systemic inflammation
K Andersen, MS Kesper, JA Marschner, L Konrad, M Ryu, SK Vr, ...
Journal of the American society of nephrology 28 (1), 76-83, 2017
Gene expression changes and community turnover differentially shape the global ocean metatranscriptome
G Salazar, L Paoli, A Alberti, J Huerta-Cepas, HJ Ruscheweyh, M Cuenca, ...
Cell 179 (5), 1068-1083. e21, 2019
Mucispirillum schaedleri antagonizes Salmonella virulence to protect mice against colitis
S Herp, S Brugiroux, D Garzetti, D Ring, LM Jochum, M Beutler, C Eberl, ...
Cell host & microbe 25 (5), 681-694. e8, 2019
Accurate and predictive antibody repertoire profiling by molecular amplification fingerprinting
TA Khan, S Friedensohn, AR Gorter de Vries, J Straszewski, ...
Science advances 2 (3), e1501371, 2016
Trophic interactions of infant bifidobacteria and Eubacterium hallii during L-fucose and fucosyllactose degradation
C Schwab, HJ Ruscheweyh, V Bunesova, VT Pham, N Beerenwinkel, ...
Frontiers in Microbiology 8, 95, 2017
Endotoxicity of lipopolysaccharide as a determinant of T-cell− mediated colitis induction in mice
K Gronbach, I Flade, O Holst, B Lindner, HJ Ruscheweyh, A Wittmann, ...
Gastroenterology 146 (3), 765-775, 2014
Bioinformatics for precision oncology
J Singer, A Irmisch, HJ Ruscheweyh, F Singer, NC Toussaint, ...
Briefings in Bioinformatics 20 (3), 778-788, 2019
NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis
J Singer, HJ Ruscheweyh, AL Hofmann, T Thurnherr, F Singer, ...
Bioinformatics 34 (1), 107-108, 2018
Gut microbial beta-glucuronidase and glycerol/diol dehydratase activity contribute to dietary heterocyclic amine biotransformation
J Zhang, C Lacroix, E Wortmann, HJ Ruscheweyh, S Sunagawa, ...
BMC microbiology 19 (1), 1-14, 2019
Critical Assessment of Metagenome Interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature Methods, 1-12, 2022
Improved metagenome analysis using MEGAN5
M El Hadidi, HJ Ruscheweyh, D Huson
Joint 21st Annual International Conference on Intelligent Sys‐tems for …, 2013
Uncharted biosynthetic potential of the ocean microbiome
L Paoli, HJ Ruscheweyh, CC Forneris, S Kautsar, Q Clayssen, G Salazar, ...
bioRxiv, 2021
High throughput sequencing provides exact genomic locations of inducible prophages and accurate phage-to-host ratios in gut microbial strains
M Zünd, HJ Ruscheweyh, CM Field, N Meyer, M Cuenca, D Hoces, ...
Microbiome 9 (1), 1-18, 2021
Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome
AA Zayed, JM Wainaina, G Dominguez-Huerta, E Pelletier, J Guo, ...
Science 376 (6589), 156-162, 2022
Multi-omics data integration reveals novel drug targets in hepatocellular carcinoma
C Dimitrakopoulos, SK Hindupur, M Colombi, D Liko, CKY Ng, ...
BMC genomics 22 (1), 1-26, 2021
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