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Ole Lund
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Identification of acquired antimicrobial resistance genes
E Zankari, H Hasman, S Cosentino, M Vestergaard, S Rasmussen, ...
Journal of antimicrobial chemotherapy 67 (11), 2640-2644, 2012
45742012
In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
A Carattoli, E Zankari, A García-Fernández, M Voldby Larsen, O Lund, ...
Antimicrobial agents and chemotherapy 58 (7), 3895-3903, 2014
32262014
Multilocus sequence typing of total-genome-sequenced bacteria
MV Larsen, S Cosentino, S Rasmussen, C Friis, H Hasman, RL Marvig, ...
Journal of clinical microbiology 50 (4), 1355-1361, 2012
19952012
ResFinder 4.0 for predictions of phenotypes from genotypes
V Bortolaia, RS Kaas, E Ruppe, MC Roberts, S Schwarz, V Cattoir, ...
Journal of Antimicrobial Chemotherapy 75 (12), 3491-3500, 2020
15042020
Improved method for predicting linear B-cell epitopes
JEP Larsen, O Lund, M Nielsen
Immunome research 2 (1), 1-7, 2006
14822006
Reliable prediction of T‐cell epitopes using neural networks with novel sequence representations
M Nielsen, C Lundegaard, P Worning, SL Lauemøller, K Lamberth, ...
Protein Science 12 (5), 1007-1017, 2003
12482003
Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli
KG Joensen, F Scheutz, O Lund, H Hasman, RS Kaas, EM Nielsen, ...
Journal of clinical microbiology 52 (5), 1501-1510, 2014
11772014
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ...
Nature biotechnology 32 (8), 822-828, 2014
10152014
NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8–11
C Lundegaard, K Lamberth, M Harndahl, S Buus, O Lund, M Nielsen
Nucleic acids research 36 (suppl_2), W509-W512, 2008
8732008
An Aboriginal Australian genome reveals separate human dispersals into Asia
M Rasmussen, X Guo, Y Wang, KE Lohmueller, S Rasmussen, ...
Science 334 (6052), 94-98, 2011
8522011
Insights from 20 years of bacterial genome sequencing
M Land, L Hauser, SR Jun, I Nookaew, MR Leuze, TH Ahn, T Karpinets, ...
Functional & integrative genomics 15, 141-161, 2015
8172015
Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction
MV Larsen, C Lundegaard, K Lamberth, S Buus, O Lund, M Nielsen
BMC bioinformatics 8, 1-12, 2007
8062007
NetMHCpan, a method for MHC class I binding prediction beyond humans
I Hoof, B Peters, J Sidney, LE Pedersen, A Sette, O Lund, S Buus, ...
Immunogenetics 61, 1-13, 2009
7802009
Prediction of residues in discontinuous B‐cell epitopes using protein 3D structures
P Haste Andersen, M Nielsen, OLE Lund
Protein Science 15 (11), 2558-2567, 2006
6822006
Solving the problem of comparing whole bacterial genomes across different sequencing platforms
RS Kaas, P Leekitcharoenphon, FM Aarestrup, O Lund
PloS one 9 (8), e104984, 2014
6752014
Peptide binding predictions for HLA DR, DP and DQ molecules
P Wang, J Sidney, Y Kim, A Sette, O Lund, M Nielsen, B Peters
BMC bioinformatics 11, 1-12, 2010
6522010
Reliable B cell epitope predictions: impacts of method development and improved benchmarking
JV Kringelum, C Lundegaard, O Lund, M Nielsen
PLoS computational biology 8 (12), e1002829, 2012
6382012
NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and-B locus protein of known sequence
M Nielsen, C Lundegaard, T Blicher, K Lamberth, M Harndahl, S Justesen, ...
PloS one 2 (8), e796, 2007
6302007
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ...
Nature communications 10 (1), 1124, 2019
6252019
Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method
M Nielsen, C Lundegaard, O Lund
BMC bioinformatics 8 (1), 1-12, 2007
6212007
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