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Kessy Abarenkov
Kessy Abarenkov
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Towards a unified paradigm for sequence‐based identification of fungi
U Kõljalg, RH Nilsson, K Abarenkov, L Tedersoo, AFS Taylor, M Bahram, ...
Molecular ecology 22 (21), 5271-5277, 2013
33972013
Global diversity and geography of soil fungi
L Tedersoo, M Bahram, S Põlme, U Kõljalg, NS Yorou, R Wijesundera, ...
science 346 (6213), 1256688, 2014
31362014
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
RH Nilsson, KH Larsson, AFS Taylor, J Bengtsson-Palme, TS Jeppesen, ...
Nucleic acids research 47 (D1), D259-D264, 2019
24562019
The UNITE database for molecular identification of fungi–recent updates and future perspectives
K Abarenkov, RH Nilsson, KH Larsson, IJ Alexander, U Eberhardt, ...
The New Phytologist 186 (2), 281-285, 2010
18682010
Improved software detection and extraction of ITS1 and ITS 2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
J Bengtsson‐Palme, M Ryberg, M Hartmann, S Branco, Z Wang, A Godhe, ...
Methods in ecology and evolution 4 (10), 914-919, 2013
12352013
UNITE: a database providing web‐based methods for the molecular identification of ectomycorrhizal fungi
U Kõljalg, KH Larsson, K Abarenkov, RH Nilsson, IJ Alexander, ...
New phytologist 166 (3), 1063-1068, 2005
11372005
Fungal community analysis by high‐throughput sequencing of amplified markers–a user's guide
BD Lindahl, RH Nilsson, L Tedersoo, K Abarenkov, T Carlsen, R Kjøller, ...
New phytologist 199 (1), 288-299, 2013
9632013
Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective
RH Nilsson, M Ryberg, E Kristiansson, K Abarenkov, KH Larsson, ...
PloS one 1 (1), e59, 2006
7912006
High-level classification of the Fungi and a tool for evolutionary ecological analyses
L Tedersoo, S Sánchez-Ramírez, U Koljalg, M Bahram, M Döring, ...
Fungal diversity 90, 135-159, 2018
6432018
454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases
L Tedersoo, RH Nilsson, K Abarenkov, T Jairus, A Sadam, I Saar, ...
New phytologist 188 (1), 291-301, 2010
6382010
FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles
S Põlme, K Abarenkov, R Henrik Nilsson, BD Lindahl, KE Clemmensen, ...
Fungal diversity 105, 1-16, 2020
5102020
Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi
L Tedersoo, S Anslan, M Bahram, S Põlme, T Riit, I Liiv, U Kõljalg, ...
MycoKeys 10, 1-43, 2015
4802015
Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon‐specific primers
L Tedersoo, T Jairus, BM Horton, K Abarenkov, T Suvi, I Saar, U Kõljalg
New Phytologist 180 (2), 479-490, 2008
4712008
ITS 1 versus ITS 2 as DNA metabarcodes for fungi
R Blaalid, S Kumar, RH Nilsson, K Abarenkov, PM Kirk, H Kauserud
Molecular ecology resources 13 (2), 218-224, 2013
4452013
Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi
CL Schoch, B Robbertse, V Robert, D Vu, G Cardinali, L Irinyi, W Meyer, ...
Database 2014, bau061, 2014
4072014
PlutoF—a web based workbench for ecological and taxonomic research, with an online implementation for fungal ITS sequences
K Abarenkov, L Tedersoo, RH Nilsson, K Vellak, I Saar, V Veldre, ...
Evolutionary Bioinformatics 6, EBO. S6271, 2010
3662010
Resistance and resilience of the forest soil microbiome to logging-associated compaction
M Hartmann, PA Niklaus, S Zimmermann, S Schmutz, J Kremer, ...
The ISME journal 8 (1), 226-244, 2014
3602014
The ITS region as a target for characterization of fungal communities using emerging sequencing technologies
RH Nilsson, M Ryberg, K Abarenkov, E Sjökvist, E Kristiansson
FEMS Microbiology Letters 296 (1), 97-101, 2009
3532009
Tree diversity and species identity effects on soil fungi, protists and animals are context dependent
L Tedersoo, M Bahram, T Cajthaml, S Põlme, I Hiiesalu, S Anslan, ...
The ISME journal 10 (2), 346-362, 2016
3462016
FungalRoot: global online database of plant mycorrhizal associations
NA Soudzilovskaia, S Vaessen, M Barcelo, J He, S Rahimlou, ...
New Phytologist 227 (3), 955-966, 2020
2792020
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