James Osborne
James Osborne
Verified email at unimelb.edu.au - Homepage
Cited by
Cited by
Chaste: an open source C++ library for computational physiology and biology
GR Mirams, CJ Arthurs, MO Bernabeu, R Bordas, J Cooper, A Corrias, ...
PLoS computational biology 9 (3), 2013
Chaste: a test-driven approach to software development for biological modelling
J Pitt-Francis, P Pathmanathan, MO Bernabeu, R Bordas, J Cooper, ...
Computer Physics Communications 180 (12), 2452-2471, 2009
An integrative computational model for intestinal tissue renewal
IMM Van Leeuwen, GR Mirams, A Walter, A Fletcher, P Murray, J Osborne, ...
Cell proliferation 42 (5), 617-636, 2009
A hybrid approach to multi-scale modelling of cancer
JM Osborne, A Walter, SK Kershaw, GR Mirams, AG Fletcher, ...
Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2010
A computational study of discrete mechanical tissue models
P Pathmanathan, J Cooper, A Fletcher, G Mirams, P Murray, J Osborne, ...
Physical biology 6 (3), 036001, 2009
Chaste: using agile programming techniques to develop computational biology software
J Pitt-Francis, MO Bernabeu, J Cooper, A Garny, L Momtahan, J Osborne, ...
Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2008
Implementing vertex dynamics models of cell populations in biology within a consistent computational framework
AG Fletcher, JM Osborne, PK Maini, DJ Gavaghan
Progress in biophysics and molecular biology 113 (2), 299-326, 2013
Comparing individual-based approaches to modelling the self-organization of multicellular tissues
JM Osborne, AG Fletcher, JM Pitt-Francis, PK Maini, DJ Gavaghan
PLoS computational biology 13 (2), e1005387, 2017
Cell morphology drives spatial patterning in microbial communities
WPJ Smith, Y Davit, JM Osborne, W Kim, KR Foster, JM Pitt-Francis
Proceedings of the National Academy of Sciences 114 (3), E280-E286, 2017
Computational models reveal a passive mechanism for cell migration in the crypt
SJ Dunn, IS Näthke, JM Osborne
PLoS One 8 (11), 2013
Cooperation, competition and antibiotic resistance in bacterial colonies
I Frost, WPJ Smith, S Mitri, A San Millan, Y Davit, JM Osborne, ...
The ISME journal 12 (6), 1582-1593, 2018
Paneth cell-rich regions separated by a cluster of Lgr5+ cells initiate crypt fission in the intestinal stem cell niche
AJ Langlands, AA Almet, PL Appleton, IP Newton, JM Osborne, IS Näthke
PLoS biology 14 (6), 2016
A two-dimensional model of the colonic crypt accounting for the role of the basement membrane and pericryptal fibroblast sheath
SJ Dunn, PL Appleton, SA Nelson, IS Näthke, DJ Gavaghan, JM Osborne
PLoS computational biology 8 (5), 2012
Ten simple rules for effective computational research
JM Osborne, MO Bernabeu, M Bruna, B Calderhead, J Cooper, ...
PLoS Computational Biology 10 (3), 2014
Hydrodynamic dispersion within porous biofilms
Y Davit, H Byrne, J Osborne, J Pitt-Francis, D Gavaghan, M Quintard
Physical Review E 87 (1), 012718, 2013
Modelling the role of the basement membrane beneath a growing epithelial monolayer
SJ Dunn, AG Fletcher, SJ Chapman, DJ Gavaghan, JM Osborne
Journal of theoretical biology 298, 82-91, 2012
The influence of bioreactor geometry and the mechanical environment on engineered tissues
JM Osborne, RD O’Dea, JP Whiteley, HM Byrne, SL Waters
Journal of biomechanical engineering 132 (5), 2010
Colorectal cancer through simulation and experiment
SK Kershaw, HM Byrne, DJ Gavaghan, JM Osborne
IET systems biology 7 (3), 57-73, 2013
Reversible host cell remodeling underpins deformability changes in malaria parasite sexual blood stages
M Dearnley, T Chu, Y Zhang, O Looker, C Huang, N Klonis, J Yeoman, ...
Proceedings of the National Academy of Sciences 113 (17), 4800-4805, 2016
The interplay between tissue growth and scaffold degradation in engineered tissue constructs
RD O’Dea, JM Osborne, AJ El Haj, HM Byrne, SL Waters
Journal of mathematical biology 67 (5), 1199-1225, 2013
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