| AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence M Feldgarden, V Brover, N Gonzalez-Escalona, JG Frye, J Haendiges, ... Scientific reports 11 (1), 12728, 2021 | 434 | 2021 |
| A non-invasive test for prenatal diagnosis based on fetal DNA present in maternal blood: a preliminary study R Dhallan, X Guo, S Emche, M Damewood, P Bayliss, M Cronin, J Barry, ... The Lancet 369 (9560), 474-481, 2007 | 309 | 2007 |
| Tracing Origins of the Salmonella Bareilly Strain Causing a Food-borne Outbreak in the United States M Hoffmann, Y Luo, SR Monday, N Gonzalez-Escalona, AR Ottesen, ... The Journal of Infectious Diseases 213 (4), 502-508, 2016 | 154 | 2016 |
| AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence. Sci Rep 11: 12728 M Feldgarden, V Brover, N Gonzalez-Escalona, JG Frye, J Haendiges, ... | 82 | 2021 |
| Genetic diversity and virulence profiles of Listeria monocytogenes recovered from bulk tank milk, milk filters, and milking equipment from dairies in the United States … SW Kim, J Haendiges, EN Keller, R Myers, A Kim, JE Lombard, JS Karns, ... PLoS One 13 (5), e0197053, 2018 | 75 | 2018 |
| Genomic Variation and Evolution of Vibrio parahaemolyticus ST36 over the Course of a Transcontinental Epidemic Expansion J Martinez-Urtaza, R Van Aerle, M Abanto, J Haendiges, RA Myers, ... MBio 8 (6), 10.1128/mbio. 01425-17, 2017 | 61 | 2017 |
| Characterization of Vibrio parahaemolyticus clinical strains from Maryland (2012–2013) and comparisons to a locally and globally diverse V. parahaemolyticus strains by whole … J Haendiges, R Timme, MW Allard, RA Myers, EW Brown, ... Frontiers in microbiology 6, 130493, 2015 | 55 | 2015 |
| Pandemic Vibrio parahaemolyticus, Maryland, USA, 2012 J Haendiges, M Rock, RA Myers, EW Brown, P Evans, ... Emerging Infectious Diseases 20 (4), 718, 2014 | 45 | 2014 |
| Virulence and resistance genes profiles and clonal relationships of non-typhoidal food-borne Salmonella strains isolated in Tunisia by whole genome sequencing AB Hassena, J Haendiges, S Zormati, S Guermazi, R Gdoura, ... International Journal of Food Microbiology 337, 108941, 2021 | 37 | 2021 |
| A nonautochthonous US strain of Vibrio parahaemolyticus isolated from Chesapeake Bay oysters caused the outbreak in Maryland in 2010 J Haendiges, J Jones, RA Myers, CS Mitchell, E Butler, M Toro, ... Applied and Environmental Microbiology 82 (11), 3208-3216, 2016 | 36 | 2016 |
| Salmonella enterica serovar Kentucky recovered from human clinical cases in Maryland, USA (2011–2015) BJ Haley, SW Kim, J Haendiges, E Keller, D Torpey, A Kim, K Crocker, ... Zoonoses and public health 66 (4), 382-392, 2019 | 35 | 2019 |
| Sequence type 631 Vibrio parahaemolyticus, an emerging foodborne pathogen in North America F Xu, N Gonzalez-Escalona, J Haendiges, RA Myers, J Ferguson, T Stiles, ... Journal of Clinical Microbiology 55 (2), 645-648, 2017 | 27 | 2017 |
| Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain J Haendiges, GR Davidson, JB Pettengill, E Reed, P Ramachandran, ... PLoS One 16 (11), e0259471, 2021 | 12 | 2021 |
| Choice of library preparation affects sequence quality, genome assembly, and precise in silico prediction of virulence genes in shiga toxin-producing Escherichia coli J Haendiges, K Jinneman, N Gonzalez-Escalona Plos one 16 (3), e0242294, 2021 | 10 | 2021 |
| Complete genome sequences of four Salmonella enterica subsp. enterica serovar Senftenberg and Montevideo isolates associated with a 2016 multistate outbreak in the United States J Haendiges, T Blessington, J Zheng, G Davidson, JD Miller, M Hoffmann Genome Announcements 6 (26), 10.1128/genomea. 00630-18, 2018 | 9 | 2018 |
| Closed genome sequences of two Clostridium botulinum strains obtained by nanopore sequencing N Gonzalez-Escalona, J Haendiges, JD Miller, SK Sharma Microbiology Resource Announcements 7 (9), 10.1128/mra. 01075-18, 2018 | 8 | 2018 |
| Whole-Genome Analysis of Halomonas sp. Soap Lake #7 Reveals It Possesses Putative Mrp Antiporter Operon Groups 1 and 2 MR Mormile, T Edwards, R Frank, Z Geurin, J Haendiges, M Hoffmann, ... Genome Biology and Evolution 11 (6), 1706-1709, 2019 | 7 | 2019 |
| Genetic diversity and virulence profiles of SW Kim, J Haendiges, EN Keller, R Myers, A Kim, JE Lombard, JS Karns, ... Listeria monocytogenes, 2018 | 7 | 2018 |
| Draft genome sequences of clinical Vibrio parahaemolyticus strains isolated in Maryland (2010 to 2013) J Haendiges, R Timme, M Allard, RA Myers, J Payne, EW Brown, P Evans, ... Genome announcements 2 (4), 10.1128/genomea. 00776-14, 2014 | 7 | 2014 |
| Vibrio parahaemolyticus sequence type 631, an emerging foodborne pathogen in North America F Xu, N Gonzalez-Escalona, J Haendiges, RA Myers, J Ferguson, T Stiles, ... J Clin Microbiol 55, 645-648, 2016 | 5 | 2016 |
