| A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information AM Feist, CS Henry, JL Reed, M Krummenacker, AR Joyce, PD Karp, ... Molecular systems biology 3 (1), 121, 2007 | 1704 | 2007 |
| Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ... Nucleic acids research 45 (D1), D535-D542, 2017 | 1398 | 2017 |
| High-throughput generation, optimization and analysis of genome-scale metabolic models CS Henry, M DeJongh, AA Best, PM Frybarger, B Linsay, RL Stevens Nature biotechnology 28 (9), 977-982, 2010 | 1128 | 2010 |
| KBase: the United States department of energy systems biology knowledgebase AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ... Nature biotechnology 36 (7), 566-569, 2018 | 972 | 2018 |
| Thermodynamics-based metabolic flux analysis CS Henry, LJ Broadbelt, V Hatzimanikatis Biophysical journal 92 (5), 1792-1805, 2007 | 705 | 2007 |
| Competitive and cooperative metabolic interactions in bacterial communities S Freilich, R Zarecki, O Eilam, ES Segal, CS Henry, M Kupiec, U Gophna, ... Nature communications 2 (1), 589, 2011 | 491 | 2011 |
| Group contribution method for thermodynamic analysis of complex metabolic networks MD Jankowski, CS Henry, LJ Broadbelt, V Hatzimanikatis Biophysical journal 95 (3), 1487-1499, 2008 | 482 | 2008 |
| A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021 | 480 | 2021 |
| Exploring the diversity of complex metabolic networks V Hatzimanikatis, C Li, JA Ionita, CS Henry, MD Jankowski, LJ Broadbelt Bioinformatics 21 (8), 1603-1609, 2005 | 415 | 2005 |
| MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 287 | 2020 |
| Genome-scale thermodynamic analysis of Escherichia coli metabolism CS Henry, MD Jankowski, LJ Broadbelt, V Hatzimanikatis Biophysical journal 90 (4), 1453-1461, 2006 | 274 | 2006 |
| SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models RK Aziz, S Devoid, T Disz, RA Edwards, CS Henry, GJ Olsen, R Olson, ... PloS one 7 (10), e48053, 2012 | 220 | 2012 |
| MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics JG Jeffryes, RL Colastani, M Elbadawi-Sidhu, T Kind, TD Niehaus, ... Journal of cheminformatics 7, 1-8, 2015 | 211 | 2015 |
| iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations CS Henry, JF Zinner, MP Cohoon, RL Stevens Genome Biol 10 (6), R69, 2009 | 200 | 2009 |
| Discovery and analysis of novel metabolic pathways for the biosynthesis of industrial chemicals: 3‐hydroxypropanoate CS Henry, LJ Broadbelt, V Hatzimanikatis Biotechnology and bioengineering 106 (3), 462-473, 2010 | 185 | 2010 |
| Automated genome annotation and metabolic model reconstruction in the SEED and Model SEED S Devoid, R Overbeek, M DeJongh, V Vonstein, AA Best, C Henry Systems metabolic engineering: methods and protocols, 17-45, 2013 | 162 | 2013 |
| The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes SMD Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, JN Edirisinghe, ... Nucleic acids research 49 (D1), D575-D588, 2021 | 133 | 2021 |
| Metabolic reconstruction and modeling microbial electrosynthesis CW Marshall, DE Ross, KM Handley, PB Weisenhorn, JN Edirisinghe, ... Scientific reports 7 (1), 8391, 2017 | 114 | 2017 |
| Computational discovery of biochemical routes to specialty chemicals C Li, CS Henry, MD Jankowski, JA Ionita, V Hatzimanikatis, LJ Broadbelt Chemical engineering science 59 (22-23), 5051-5060, 2004 | 106 | 2004 |
| Building the repertoire of dispensable chromosome regions in Bacillus subtilis entails major refinement of cognate large-scale metabolic model K Tanaka, CS Henry, JF Zinner, E Jolivet, MP Cohoon, F Xia, V Bidnenko, ... Nucleic acids research 41 (1), 687-699, 2013 | 105 | 2013 |
Rick StevensProfessor of Computer Science, University of ChicagoVerified email at ci.uchicago.edu
