Christopher Henry

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Vassily HatzimanikatisAssociate Professor, EPFLVerified email at epfl.ch
Rick StevensProfessor of Computer Science, University of ChicagoVerified email at ci.uchicago.edu
Andrew D. HansonHorticultural Sciences Department, University of FloridaVerified email at ufl.edu
Janaka N EdirisingheAssistant Scientist, Argonne National Labs / University of Chicago, IL, USAVerified email at anl.gov
Matthew DeJonghProfessor of Computer Science, Hope CollegeVerified email at hope.edu
Aaron BestHarrison C. and Mary L. Visscher Professor of Genetics, Hope CollegeVerified email at hope.edu
José P. FariaAssistant Computational BiologistVerified email at anl.gov
Jack A GilbertUniversity of California, San DiegoVerified email at ucsd.edu
Sam SeaverComputational Scientist, Argonne National LaboratoryVerified email at mcs.anl.gov
James JeffryesPostdoctoral Researcher, Argonne National LaboratoryVerified email at mcs.anl.gov
Valerie de Crecy-LagardMicrobiology and Cell Science, University of FloridaVerified email at ufl.edu
Fangfang XiaScientist, Argonne National LaboratoryVerified email at anl.gov
Veronika VonsteinFellowship for Interpretation of GenomesVerified email at theFIG.info
Peter D. KarpDirector of the Bioinformatics Research Group, SRI InternationalVerified email at ai.sri.com
Rob EdwardsMatthew Flinders Fellow of Bioinformatics, Flinders University, Adelaide, SA, AustraliaVerified email at flinders.edu.au
Eytan RuppinChief, Cancer Data Science Lab (CDSL), NCI/NIHVerified email at nih.gov
Thomas D NiehausAssistant Professor, University of MinnesotaVerified email at umn.edu
Robert OlsonArgonne National LaboratoryVerified email at mcs.anl.gov
Uri GophnaThe Shmunis School of Biomedicine and Cancer Research, Tel Aviv UniversityVerified email at tauex.tau.ac.il
Keith TyoAssociate Professor of Chemical and Biological Engineering, Northwestern UniversityVerified email at northwestern.edu

Christopher Henry

Computational Biologist, Argonne National Laboratory

Verified email at mcs.anl.gov

Metabolic Modeling and Computational Biology


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A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information AM Feist, CS Henry, JL Reed, M Krummenacker, AR Joyce, PD Karp, ... Molecular systems biology 3 (1), 121, 2007	1643	2007
Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ... Nucleic acids research 45 (D1), D535-D542, 2017	1123	2017
High-throughput generation, optimization and analysis of genome-scale metabolic models CS Henry, M DeJongh, AA Best, PM Frybarger, B Linsay, RL Stevens Nature biotechnology 28 (9), 977-982, 2010	1039	2010
Thermodynamics-based metabolic flux analysis CS Henry, LJ Broadbelt, V Hatzimanikatis Biophysical journal 92 (5), 1792-1805, 2007	661	2007
KBase: the United States department of energy systems biology knowledgebase AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ... Nature biotechnology 36 (7), 566-569, 2018	649	2018
Group contribution method for thermodynamic analysis of complex metabolic networks MD Jankowski, CS Henry, LJ Broadbelt, V Hatzimanikatis Biophysical journal 95 (3), 1487-1499, 2008	456	2008
Competitive and cooperative metabolic interactions in bacterial communities S Freilich, R Zarecki, O Eilam, ES Segal, CS Henry, M Kupiec, U Gophna, ... Nature communications 2 (1), 1-7, 2011	435	2011
Exploring the diversity of complex metabolic networks V Hatzimanikatis, C Li, JA Ionita, CS Henry, MD Jankowski, LJ Broadbelt Bioinformatics 21 (8), 1603-1609, 2005	387	2005
Genome-scale thermodynamic analysis of Escherichia coli metabolism CS Henry, MD Jankowski, LJ Broadbelt, V Hatzimanikatis Biophysical journal 90 (4), 1453-1461, 2006	263	2006
A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021	239	2021
iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations CS Henry, JF Zinner, MP Cohoon, RL Stevens Genome Biol 10 (6), R69, 2009	183	2009
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models RK Aziz, S Devoid, T Disz, RA Edwards, CS Henry, GJ Olsen, R Olson, ... PloS one 7 (10), e48053, 2012	182	2012
MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics JG Jeffryes, RL Colastani, M Elbadawi-Sidhu, T Kind, TD Niehaus, ... Journal of cheminformatics 7 (1), 1-8, 2015	179	2015
MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020	177	2020
Discovery and analysis of novel metabolic pathways for the biosynthesis of industrial chemicals: 3‐hydroxypropanoate CS Henry, LJ Broadbelt, V Hatzimanikatis Biotechnology and bioengineering 106 (3), 462-473, 2010	173	2010
Automated genome annotation and metabolic model reconstruction in the SEED and Model SEED S Devoid, R Overbeek, M DeJongh, V Vonstein, AA Best, C Henry Systems Metabolic Engineering, 17-45, 2013	141	2013
Computational discovery of biochemical routes to specialty chemicals C Li, CS Henry, MD Jankowski, JA Ionita, V Hatzimanikatis, LJ Broadbelt Chemical engineering science 59 (22-23), 5051-5060, 2004	103	2004
Metabolic reconstruction and modeling microbial electrosynthesis CW Marshall, DE Ross, KM Handley, PB Weisenhorn, JN Edirisinghe, ... Scientific reports 7 (1), 1-12, 2017	93	2017
Building the repertoire of dispensable chromosome regions in Bacillus subtilis entails major refinement of cognate large-scale metabolic model K Tanaka, CS Henry, JF Zinner, E Jolivet, MP Cohoon, F Xia, V Bidnenko, ... Nucleic acids research 41 (1), 687-699, 2013	93	2013
Plant B vitamin pathways and their compartmentation: a guide for the perplexed S Gerdes, C Lerma-Ortiz, O Frelin, SMD Seaver, CS Henry, ... Journal of experimental botany 63 (15), 5379-5395, 2012	89	2012

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