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Patricia Q. Tran
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METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks
Z Zhou, PQ Tran, AM Breister, Y Liu, K Kieft, ES Cowley, U Karaoz, ...
Microbiome 10 (1), 33, 2022
253*2022
Genome diversification in globally distributed novel marine Proteobacteria is linked to environmental adaptation
Z Zhou, PQ Tran, K Kieft, K Anantharaman
The ISME Journal, 2020
1512020
Genomic evidence for the degradation of terrestrial organic matter by pelagic Arctic Ocean Chloroflexi bacteria
D Colatriano, PQ Tran, C Guéguen, WJ Williams, C Lovejoy, DA Walsh
Communications biology 1 (1), 90, 2018
992018
Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake Tanganyika
PQ Tran, SC Bachand, PB McIntyre, BM Kraemer, Y Vadeboncoeur, ...
The ISME Journal 15 (7), 1971-1986, 2021
902021
Microbial life under ice: Metagenome diversity and in situ activity of Verrucomicrobia in seasonally ice‐covered Lakes
P Tran, A Ramachandran, O Khawasik, BE Beisner, M Rautio, Y Huot, ...
Environmental microbiology 20 (7), 2568-2584, 2018
762018
Expanded phylogenetic diversity and metabolic flexibility of mercury-methylating microorganisms
EA McDaniel, BD Peterson, SLR Stevens, PQ Tran, K Anantharaman, ...
MSystems 5 (4), 10.1128/msystems. 00299-20, 2020
65*2020
Mercury methylation genes identified across diverse anaerobic microbial guilds in a eutrophic sulfate-enriched lake
BD Peterson, EA McDaniel, AG Schmidt, RF Lepak, SE Janssen, PQ Tran, ...
Environmental Science & Technology 54 (24), 15840-15851, 2020
622020
Biogeochemistry goes viral: towards a multifaceted approach to study viruses and biogeochemical cycling
PQ Tran, K Anantharaman
Msystems 6 (5), 10.1128/msystems. 01138-21, 2021
122021
Sulfur cycling connects microbiomes and biogeochemistry in deep-sea hydrothermal plumes
Z Zhou, PQ Tran, AM Adams, K Kieft, JA Breier, CS Fortunato, CS Sheik, ...
The ISME Journal 17 (8), 1194-1207, 2023
112023
The AEMON-J “Hacking Limnology” workshop series & virtual summit: Incorporating data science and open science in aquatic research
MF Meyer, R Ladwig, JP Mesman, IA Oleksy, CC Barbosa, KM Cawley, ...
Limnology and Oceanography Bulletin 30 (4), 140-143, 2021
42021
Viromes vs. mixed community metagenomes: choice of method dictates interpretation of viral community ecology
JC Kosmopoulos, KM Klier, MV Langwig, PQ Tran, K Anantharaman
bioRxiv, 2023
32023
Environmental predictors of electroactive bacterioplankton in small boreal lakes
CN Olmsted, R Ort, PQ Tran, EA McDaniel, EE Roden, DR Bond, S He, ...
Environmental microbiology 25 (3), 705-720, 2023
32023
Hacking limnology workshop and DSOS22: Creating a community of practice for the nexus of data science, open science, and the aquatic sciences
MF Meyer, CC Barbosa, R Ladwig, JP Mesman, NS Börekçi, K Cawley, ...
Limnology and Oceanography Bulletin 31 (4), 2022
32022
Diversity, distribution, and expression of opsin genes in freshwater lake
S He, AM Linz, SLR Stevens, PQ Tran, F Moya-Flores, BO Oyserman, ...
Molecular Ecology, 01-20, 2023
22023
Viral impacts on microbial activity and biogeochemical cycling in a seasonally anoxic freshwater lake
PQ Tran, SC Bachand, B Peterson, S He, K McMahon, K Anantharaman
bioRxiv, 2023.04. 19.537559, 2023
22023
Physiological and genomic evidence of cysteine degradation and aerobic hydrogen sulfide production in freshwater bacteria
PQ Tran, SC Bachand, JC Hotvedt, K Kieft, EA McDaniel, KD McMahon, ...
Msystems 8 (3), e00201-23, 2023
12023
zol & fai: large-scale targeted detection and evolutionary investigation of gene clusters
R Salamzade, P Tran, C Martin, AL Manson, MS Gilmore, AM Earl, ...
bioRxiv, 2023
12023
A 20-year time-series of a freshwater lake reveals seasonal dynamics and environmental drivers of viral diversity, ecology, and evolution
K Anantharaman, Z Zhou, P Tran, C Martin, R Rohwer, B Baker, ...
2024
A 20-year time-series of a freshwater lake reveals seasonal dynamics and environmental drivers of viral diversity, ecology, and evolution
Z Zhou, PQ Tran, C Martin, RR Rohwer, B Baker, K McMahon, ...
bioRxiv, 2024.02. 06.579183, 2024
2024
An integrated understanding of microbial roles in biogeochemical cycling in anoxic lakes
PQ Tran
The University of Wisconsin-Madison, 2023
2023
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