| The structure–function linkage database E Akiva, S Brown, DE Almonacid, AE Barber 2nd, AF Custer, MA Hicks, ... Nucleic acids research 42 (D1), D521-D530, 2014 | 206 | 2014 |
| Self-sampling for human papillomavirus testing: increased cervical cancer screening participation and incorporation in international screening programs S Gupta, C Palmer, EM Bik, JP Cardenas, H Nunez, L Kraal, SW Bird, ... Frontiers in public health, 77, 2018 | 108 | 2018 |
| MACiE: exploring the diversity of biochemical reactions GL Holliday, C Andreini, JD Fischer, SA Rahman, DE Almonacid, ... Nucleic acids research 40 (D1), D783-D789, 2012 | 86 | 2012 |
| MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms GL Holliday, DE Almonacid, GJ Bartlett, NM O'Boyle, JW Torrance, ... Nucleic acids research 35 (suppl_1), D515-D520, 2007 | 83 | 2007 |
| 16S rRNA gene sequencing and healthy reference ranges for 28 clinically relevant microbial taxa from the human gut microbiome DE Almonacid, L Kraal, FJ Ossandon, YV Budovskaya, JP Cardenas, ... PloS one 12 (5), e0176555, 2017 | 70 | 2017 |
| Method and system for microbiome-derived diagnostics and therapeutics Z Apte, J Richman, SR Behbahani, D Almonacid US Patent 9,703,929, 2017 | 69 | 2017 |
| Prediction of function for the polyprenyl transferase subgroup in the isoprenoid synthase superfamily FH Wallrapp, JJ Pan, G Ramamoorthy, DE Almonacid, BS Hillerich, ... Proceedings of the National Academy of Sciences 110 (13), E1196-E1202, 2013 | 65 | 2013 |
| The structure at 2 Å resolution of Phycocyanin from Gracilaria chilensis and the energy transfer network in a PC–PC complex C Contreras-Martel, A Matamala, C Bruna, G Poo-Caamaño, D Almonacid, ... Biophysical chemistry 125 (2), 388-396, 2007 | 65 | 2007 |
| MACiE: a database of enzyme reaction mechanisms GL Holliday, GJ Bartlett, DE Almonacid, NM O'Boyle, P Murray-Rust, ... Bioinformatics 21 (23), 4315-4316, 2005 | 57 | 2005 |
| The chemistry of protein catalysis GL Holliday, DE Almonacid, JBO Mitchell, JM Thornton Journal of molecular biology 372 (5), 1261-1277, 2007 | 54 | 2007 |
| Method and system for microbiome-derived diagnostics and therapeutics Z Apte, J Richman, D Almonacid US Patent 10,242,160, 2019 | 46 | 2019 |
| A Transient Receptor Potential Ion Channel in Chlamydomonas Shares Key Features with Sensory Transduction-Associated TRP Channels in Mammals L Arias-Darraz, D Cabezas, CK Colenso, M Alegría-Arcos, ... The Plant Cell 27 (1), 177-188, 2015 | 46 | 2015 |
| Using reaction mechanism to measure enzyme similarity NM O'Boyle, GL Holliday, DE Almonacid, JBO Mitchell Journal of molecular biology 368 (5), 1484-1499, 2007 | 46 | 2007 |
| Method and system for microbiome-derived characterization, diagnostics and therapeutics for conditions associated with functional features Z Apte, D Almonacid, J Richman, SR Behbahani US Patent 10,357,157, 2019 | 45 | 2019 |
| Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function DE Almonacid, ER Yera, JBO Mitchell, PC Babbitt PLoS computational biology 6 (3), e1000700, 2010 | 44 | 2010 |
| Toward mechanistic classification of enzyme functions DE Almonacid, PC Babbitt Current opinion in chemical biology 15 (3), 435-442, 2011 | 43 | 2011 |
| Method and system for microbiome-derived diagnostics and therapeutics for neurological health issues Z Apte, D Almonacid, J Richman, SR Belbahani US Patent App. 15/294,482, 2017 | 41 | 2017 |
| Method and system for microbiome-derived diagnostics and therapeutics Z Apte, J Richman, D Almonacid US Patent 10,380,325, 2019 | 40 | 2019 |
| Method and system for microbiome-derived diagnostics Z Apte, J Richman, D Almonacid US Patent 10,360,346, 2019 | 40 | 2019 |
| Method and system for microbiome-derived diagnostics and therapeutics Z Apte, J Richman, D Almonacid US Patent 10,346,588, 2019 | 40 | 2019 |
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