| Inferring causal molecular networks: empirical assessment through a community-based effort SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ... Nature methods 13 (4), 310, 2016 | 237 | 2016 |
| Metabolic Modelling as a Framework for Metabolomics Data Integration and Analysis S Volkova, MRA Matos, M Mattanovich, I Marín de Mas Metabolites 10 (8), 303, 2020 | 54 | 2020 |
| Model-guided dynamic control of essential metabolic nodes boosts acetyl-coenzyme A–dependent bioproduction in rewired Pseudomonas putida E Kozaeva, S Volkova, MRA Matos, MP Mezzina, T Wulff, DC Volke, ... Metabolic Engineering 67, 373-386, 2021 | 39 | 2021 |
| Chain length mismatch and packing effects on the thermotropic phase behavior of salt-free catanionic surfactants MRA Matos, BFB Silva, EF Marques Journal of colloid and interface science 405, 134-144, 2013 | 23 | 2013 |
| Combined In-Cell NMR and Simulation Approach to Probe Redox-Dependent Pathway Control PR Jensen, MRA Matos, N Sonnenschein, S Meier Analytical chemistry 91 (8), 5395-5402, 2019 | 8 | 2019 |
| GRASP: a computational platform for building kinetic models of cellular metabolism MRA Matos, PA Saa, N Cowie, S Volkova, M de Leeuw, LK Nielsen Bioinformatics Advances 2 (1), vbac066, 2022 | 5 | 2022 |
| yaml2sbml: Human-readable and-writable specification of ODE models and their conversion to SBML J Vanhoefer, MRA Marta, D Pathirana, Y Schälte, J Hasenauer Journal of Open Source Software 6 (61), 3215, 2021 | 3 | 2021 |
| lpNet: a linear programming approach to reconstruct signal transduction networks MRA Matos, B Knapp, L Kaderali Bioinformatics 31 (19), 3231-3233, 2015 | 3 | 2015 |
| Omics data for sampling thermodynamically feasible kinetic models M de Leeuw, MRA Matos, LK Nielsen Metabolic Engineering 78, 41-47, 2023 | | 2023 |
| Bottom-up parameterization of enzyme rate constants: Reconciling inconsistent data D Zielinski, MRA Matos, JE de Bree, K Glass, N Sonnenschein, ... bioRxiv, 2023.12. 05.570215, 2023 | | 2023 |
| Mass Action Stoichiometric Simulation for Cell Factory Design MRA Matos Technical University of Denmark, 2018 | | 2018 |
| lpNet, bioconductor package B Knapp, MRA Matos, J Mazur, L Kaderali https://www.bioconductor.org/packages/release/bioc/html/lpNet.html, 2015 | | 2015 |
| Network inference: extension of linear programming model for time-series data MRA Matos University of Minho, 2013 | | 2013 |
