A fully automatic gridding method for cDNA microarray images L Rueda, I Rezaeian BMC bioinformatics 12, 1-17, 2011 | 70 | 2011 |
Transcriptomics signature from next-generation sequencing data reveals new transcriptomic biomarkers related to prostate cancer A Alkhateeb, I Rezaeian, S Singireddy, D Cavallo-Medved, LA Porter, ... Cancer informatics 18, 1176935119835522, 2019 | 66 | 2019 |
Predicting outcomes of hormone and chemotherapy in the molecular taxonomy of breast cancer international consortium (METABRIC) study by biochemically-inspired machine learning EJ Mucaki, K Baranova, HQ Pham, I Rezaeian, D Angelov, A Ngom, ... F1000Research 5, 2016 | 40 | 2016 |
Identifying differentially expressed transcripts associated with prostate cancer progression using RNA-Seq and machine learning techniques S Singireddy, A Alkhateeb, I Rezaeian, L Rueda, D Cavallo-Medved, ... 2015 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2015 | 20 | 2015 |
Identifying informative genes for prediction of breast cancer subtypes I Rezaeian, Y Li, M Crozier, E Andrechek, A Ngom, L Rueda, L Porter Pattern Recognition in Bioinformatics: 8th IAPR International Conference …, 2013 | 14 | 2013 |
Identification of discriminative genes for predicting breast cancer subtypes R Etemadi, A Alkhateeb, I Rezaeian, L Rueda 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2016 | 13 | 2016 |
A new clustering method using wavelet based probability density functions for identifying patterns in time-series data M Kordestani, A Alkhateeb, I Rezaeian, L Rueda, M Saif 2016 IEEE EMBS International Student Conference (ISC), 1-4, 2016 | 11 | 2016 |
Breast cancer subtype identification using machine learning techniques F Firoozbakht, I Rezaeian, L Porter, L Rueda 2014 IEEE 4TH International conference on computational advances in bio and …, 2014 | 11 | 2014 |
Computationally repurposing drugs for breast cancer subtypes using a network-based approach F Firoozbakht, I Rezaeian, L Rueda, A Ngom BMC bioinformatics 23 (1), 143, 2022 | 9 | 2022 |
An integrative approach for identifying network biomarkers of breast cancer subtypes using genomic, interactomic, and transcriptomic data F Firoozbakht, I Rezaeian, M D'agnillo, L Porter, L Rueda, A Ngom Journal of Computational Biology 24 (8), 756-766, 2017 | 9 | 2017 |
Finding transcripts associated with prostate cancer gleason stages using next generation sequencing and machine learning techniques O Hamzeh, A Alkhateeb, I Rezaeian, A Karkar, L Rueda Bioinformatics and Biomedical Engineering: 5th International Work-Conference …, 2017 | 9 | 2017 |
Obtaining biomarkers in cancer progression from outliers of time-series clusters A Alkhateeb, I Rezaeian, S Singireddy, L Rueda 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2015 | 7 | 2015 |
A novel model used to detect differential splice junctions as biomarkers in prostate cancer from RNA-Seq data I Rezaeian, A Tavakoli, D Cavallo-Medved, LA Porter, L Rueda Journal of Biomedical Informatics 60, 422-430, 2016 | 5 | 2016 |
A new compact set of biomarkers for distinguishing among ten breast cancer subtypes F Firoozbakht, I Rezaeian, A Ngom, L Rueda 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2015 | 5 | 2015 |
CMT: A constrained multi-level thresholding approach for ChIP-Seq data analysis I Rezaeian, L Rueda Plos one 9 (4), e93873, 2014 | 5 | 2014 |
Systems and methods for generating graph data structure objects with homomorphism K Belezko, M Chang-kit, GUO Xiuzhan, A Kulkarni, B Mcgoey, I Rezaeian, ... US Patent App. 17/099,068, 2021 | 4 | 2021 |
A novel approach for finding informative genes in ten subtypes of breast cancer F Firoozbakht, I Rezaeian, A Ngom, L Rueda, L Porter 2015 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2015 | 4 | 2015 |
A new algorithm for finding enriched regions in chip-seq data I Rezaeian, L Rueda Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012 | 3 | 2012 |
A parameterless automatic spot detection method for cDNA microarray images I Rezaeian, L Rueda 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2010 | 2 | 2010 |
Sub-grid and spot detection in DNA microarray images using optimal multi-level thresholding I Rezaeian, L Rueda Pattern Recognition in Bioinformatics: 5th IAPR International Conference …, 2010 | 2 | 2010 |