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Tom Ferrin
Tom Ferrin
Professor of Pharmaceutical Chemistry, UCSF
Verified email at cgl.ucsf.edu - Homepage
Title
Cited by
Cited by
Year
UCSF Chimera—a visualization system for exploratory research and analysis
EF Pettersen, TD Goddard, CC Huang, GS Couch, DM Greenblatt, ...
Journal of computational chemistry 25 (13), 1605-1612, 2004
355582004
A geometric approach to macromolecule-ligand interactions
ID Kuntz, JM Blaney, SJ Oatley, R Langridge, TE Ferrin
Journal of molecular biology 161 (2), 269-288, 1982
28981982
UCSF ChimeraX: Meeting modern challenges in visualization and analysis
TD Goddard, CC Huang, EC Meng, EF Pettersen, GS Couch, JH Morris, ...
Protein Science 27 (1), 14-25, 2018
20802018
UCSF ChimeraX: Structure visualization for researchers, educators, and developers
EF Pettersen, TD Goddard, CC Huang, EC Meng, GS Couch, TI Croll, ...
Protein Science 30 (1), 70-82, 2021
14382021
The MIDAS display system
TE Ferrin, CC Huang, LE Jarvis, R Langridge
Journal of molecular graphics 6 (1), 13-27, 1988
12141988
Visualizing density maps with UCSF Chimera
TD Goddard, CC Huang, TE Ferrin
Journal of structural biology 157 (1), 281-287, 2007
7632007
UCSF Chimera, MODELLER, and IMP: an integrated modeling system
Z Yang, K Lasker, D Schneidman-Duhovny, B Webb, CC Huang, ...
Journal of structural biology 179 (3), 269-278, 2012
5322012
Tools for integrated sequence-structure analysis with UCSF Chimera
EC Meng, EF Pettersen, GS Couch, CC Huang, TE Ferrin
BMC bioinformatics 7 (1), 1-10, 2006
5262006
Designed divergent evolution of enzyme function
Y Yoshikuni, TE Ferrin, JD Keasling
Nature 440 (7087), 1078-1082, 2006
4962006
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
JH Morris, L Apeltsin, AM Newman, J Baumbach, T Wittkop, G Su, ...
BMC bioinformatics 12 (1), 1-14, 2011
4872011
Sequence diversity and haplotype structure in the human ABCB1 (MDR1, multidrug resistance transporter) gene
DL Kroetz, C Pauli-Magnus, LM Hodges, CC Huang, M Kawamoto, ...
Pharmacogenetics and Genomics 13 (8), 481-494, 2003
4822003
Using sequence similarity networks for visualization of relationships across diverse protein superfamilies
HJ Atkinson, JH Morris, TE Ferrin, PC Babbitt
PloS one 4 (2), e4345, 2009
4022009
Evolutionary conservation predicts function of variants of the human organic cation transporter, OCT1
Y Shu, MK Leabman, B Feng, LM Mangravite, CC Huang, D Stryke, ...
Proceedings of the National Academy of Sciences 100 (10), 5902-5907, 2003
3312003
ModBase, a database of annotated comparative protein structure models, and associated resources
U Pieper, BM Webb, DT Barkan, D Schneidman-Duhovny, A Schlessinger, ...
Nucleic acids research 39 (suppl_1), D465-D474, 2010
3302010
Real-time color graphics in studies of molecular interactions
R Langridge, TE Ferrin, ID Kuntz, ML Connolly
Science 211 (4483), 661-666, 1981
3101981
MODBASE, a database of annotated comparative protein structure models, and associated resources
U Pieper, N Eswar, H Braberg, MS Madhusudhan, FP Davis, AC Stuart, ...
Nucleic acids research 32 (suppl_1), D217-D222, 2004
2932004
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells
D Stryke, M Kawamoto, CC Huang, SJ Johns, LA King, CA Harper, ...
Nucleic Acids Research 31 (1), 278-281, 2003
2802003
Chimera: an extensible molecular modeling application constructed using standard components
CC Huang, GS Couch, EF Pettersen, TE Ferrin
Pacific symposium on biocomputing 1, 724, 1996
2781996
Natural variation in human membrane transporter genes reveals evolutionary and functional constraints
MK Leabman, CC Huang, J DeYoung, EJ Carlson, TR Taylor, ...
Proceedings of the National Academy of Sciences 100 (10), 5896-5901, 2003
2682003
Software extensions to UCSF chimera for interactive visualization of large molecular assemblies
TD Goddard, CC Huang, TE Ferrin
Structure 13 (3), 473-482, 2005
2252005
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