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Manuel Bernal Llinares
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The PRIDE database and related tools and resources in 2019: improving support for quantification data
Y Perez-Riverol, A Csordas, J Bai, M Bernal-Llinares, S Hewapathirana, ...
Nucleic acids research 47 (D1), D442-D450, 2019
61902019
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
EW Deutsch, A Csordas, Z Sun, A Jarnuczak, Y Perez-Riverol, T Ternent, ...
Nucleic acids research, gkw936, 2016
8542016
The next-generation Open Targets Platform: reimagined, redesigned, rebuilt
D Ochoa, A Hercules, M Carmona, D Suveges, J Baker, C Malangone, ...
Nucleic acids research 51 (D1), D1353-D1359, 2023
1092023
Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRASG13D
SA Kennedy, MA Jarboui, S Srihari, C Raso, K Bryan, L Dernayka, ...
Nature communications 11 (1), 499, 2020
512020
Contextual Hub Analysis Tool (CHAT): A Cytoscape app for identifying contextually relevant hubs in biological networks
T Muetze, IH Goenawan, HL Wiencko, M Bernal-Llinares, K Bryan, ...
F1000Research 5, 2016
362016
HiQuant: rapid postquantification analysis of large-scale MS-generated proteomics data
K Bryan, MA Jarboui, C Raso, M Bernal-Llinares, B McCann, J Rauch, ...
Journal of Proteome Research 15 (6), 2072-2079, 2016
102016
Identifiers. org: Compact Identifier services in the cloud
M Bernal-Llinares, J Ferrer-Gómez, N Juty, C Goble, SM Wimalaratne, ...
Bioinformatics 37 (12), 1781-1782, 2021
72021
A fault-tolerant processing method and strategy of web service composition
Y Dong, L Lei, MB Llinares
Advances in Computer Science, Environment, Ecoinformatics, and Education …, 2011
32011
Identifiers. org: Compact Identifier services in the cloud.
MB Llinares, J Ferrer-Gómez, NS Juty, CA Goble, SM Wimalaratne, ...
Bioinform. 37 (12), 1781-1782, 2021
12021
A decoupled, modular and scriptable architecture for tools to curate data platforms
M Langenstein, H Hermjakob, M Bernal Llinares
Bioinformatics 37 (20), 3693-3694, 2021
2021
D4. 4 Organizational IDs in Practice
C Ferguson, S Lambert, MB Llinares, F Madden, R Dasler, M Fenner, ...
2019
Identifiers. org Compact Identifier services
S Wimalaratne, M Bernal-Llinares, N Juty, H Hermjakob
Semantic Web Applications and Tools for Healthcare and Life Sciences, 2018
2018
Contextual Hub Analysis Tool (CHAT): A Cytoscape app for
T Muetze, IH Goenawan, HL Wiencko, M Bernal-Llinares, K Bryan, ...
2016
A method for web services fault tolerance based on ripple effect analysis
D Yang, L Liu, MB Llinares
Key Engineering Materials 474, 1617-1620, 2011
2011
Interoperability in the Building of Next Generation of Collaborative Working Environments
MA Martínez-Carreras, A Ruiz-Martínez, MB Llinares
Electronic Business Interoperability: Concepts, Opportunities and Challenges …, 2011
2011
Data Commons Pilot Phase Consortium
MB Llinares, C Castillo, RK Chard, M Crosas, M Fenner, DZ Flamig, ...
CHAT User Manual
T Muetze, IH Goenawan, HL Wiencko, M Bernal-Llinares, K Bryan, ...
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