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Joana Pereira
Joana Pereira
Sonstige NamenJoana Soares Pereira, Joana Maria Soares Pereira
Postdoctoral researcher, Biozentrum, University of Basel
Bestätigte E-Mail-Adresse bei unibas.ch
Titel
Zitiert von
Zitiert von
Jahr
Comparative genomics reveals insights into avian genome evolution and adaptation
G Zhang, C Li, Q Li, B Li, DM Larkin, C Lee, JF Storz, A Antunes, ...
Science 346 (6215), 1311-1320, 2014
10392014
High‐accuracy protein structure prediction in CASP14
J Pereira, AJ Simpkin, MD Hartmann, DJ Rigden, RM Keegan, AN Lupas
Proteins: Structure, Function, and Bioinformatics 89 (12), 1687-1699, 2021
2552021
The CCP4 suite: integrative software for macromolecular crystallography
J Agirre, M Atanasova, H Bagdonas, CB Ballard, A Baslé, ...
Acta Crystallographica Section D: Structural Biology 79 (6), 449-461, 2023
1302023
The breakthrough in protein structure prediction
AN Lupas, J Pereira, V Alva, F Merino, M Coles, MD Hartmann
Biochemical journal 478 (10), 1885-1890, 2021
482021
Assessing the utility of CASP14 models for molecular replacement
C Millán, RM Keegan, J Pereira, MD Sammito, AJ Simpkin, AJ McCoy, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1752-1769, 2021
432021
Evolutionary genomics and adaptive evolution of the hedgehog gene family (shh, ihh and dhh) in vertebrates
J Pereira, WE Johnson, SJ O’Brien, ED Jarvis, G Zhang, MTP Gilbert, ...
PLoS ONE 9 (12), 1-35, 2014
402014
Uncovering new families and folds in the natural protein universe
J Durairaj, AM Waterhouse, T Mets, T Brodiazhenko, M Abdullah, ...
Nature 622 (7983), 646-653, 2023
30*2023
Sequence assignment for low-resolution modelling of protein crystal structures
G Chojnowski, J Pereira, VS Lamzin
Acta Crystallographica Section D: Structural Biology 75 (8), 753-763, 2019
302019
The use of local structural similarity of distant homologues for crystallographic model building from a molecular-replacement solution
G Chojnowski, K Choudhury, P Heuser, E Sobolev, J Pereira, ...
Acta Crystallographica Section D: Structural Biology 76 (3), 248-260, 2020
222020
The origin of mitochondria-specific outer membrane β-barrels from an ancestral bacterial fragment
J Pereira, AN Lupas
Genome biology and evolution 10 (10), 2759-2765, 2018
172018
A distance geometry-based description and validation of protein main-chain conformation
J Pereira, VS Lamzin
IUCRj 4 (5), 2017
172017
Estimation of the protein-ligand interaction energy for model building and validation
DA Beshnova, J Pereira, VS Lamzin
Acta Crystallographica Section D 73, 195-202, 2017
132017
The Ancestral KH Peptide at the Root of a Domain Family With Three Different Folds
J Pereira, AN Lupas
Bioinformatics, 2018
122018
Gram-negative outer-membrane proteins with multiple β-barrel domains
R Solan, J Pereira, AN Lupas, R Kolodny, N Ben-Tal
Proceedings of the National Academy of Sciences 118 (31), e2104059118, 2021
112021
How do I get the most out of my protein sequence using bioinformatics tools?
J Pereira, V Alva
Acta Crystallographica Section D: Structural Biology 77 (9), 1116-1126, 2021
102021
GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts
J Pereira
Journal of Molecular Biology 433 (11), 166943, 2021
52021
Building atomic models into electron microscopy maps with ARP/wARP version 8.0
G Chojnowski, P Heuser, J Pereira, V Lamzin
Acta Crystallographica Section A: Foundations and Advances 74, e151-e151, 2018
52018
The VCBS superfamily forms a third supercluster of β-propellers that includes tachylectin and integrins
J Pereira, AN Lupas
Bioinformatics 36 (24), 5618-5622, 2020
42020
Interactomes in the era of deep learning
J Pereira, T Schwede
Science 374 (6573), 1319-1320, 2021
32021
The SWISS‐MODEL Repository of 3D Protein Structures and Models
X Robin, AM Waterhouse, S Bienert, G Studer, LT Alexander, G Tauriello, ...
Open Access Databases and Datasets for Drug Discovery, 175-199, 2024
12024
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