Zhichao (Chichau) Miao
Zhichao (Chichau) Miao
EMBL-EBI, Wellcome Sanger Institute
Verified email at ebi.ac.uk
TitleCited byYear
RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures
Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ...
Rna 21 (6), 1066-1084, 2015
1062015
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme
Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ...
Rna 23 (5), 655-672, 2017
752017
RNA structure analysis of human spliceosomes reveals a compact 3D arrangement of snRNAs at the catalytic core
M Anokhina, S Bessonov, Z Miao, E Westhof, K Hartmuth, R Lührmann
The EMBO journal 32 (21), 2804-2818, 2013
582013
RNA structure: advances and assessment of 3D structure prediction
Z Miao, E Westhof
Annual review of biophysics 46, 483-503, 2017
572017
RASP: rapid modeling of protein side chain conformations
Z Miao, Y Cao, T Jiang
Bioinformatics 27 (22), 3117-3122, 2011
552011
A test metric for assessing single-cell RNA-seq batch correction
M Büttner, Z Miao, FA Wolf, SA Teichmann, FJ Theis
Nature methods 16 (1), 43-49, 2019
412019
Prediction of nucleic acid binding probability in proteins: a neighboring residue network based score
Z Miao, E Westhof
Nucleic acids research 43 (11), 5340-5351, 2015
402015
Mutations in signal recognition particle SRP54 cause syndromic neutropenia with Shwachman-Diamond–like features
R Carapito, M Konantz, C Paillard, Z Miao, A Pichot, MS Leduc, Y Yang, ...
The Journal of clinical investigation 127 (11), 4090-4103, 2017
382017
Improved side-chain modeling by coupling clash-detection guided iterative search with rotamer relaxation
Y Cao, L Song, Z Miao, Y Hu, L Tian, T Jiang
Bioinformatics 27 (6), 785-790, 2011
382011
A large-scale assessment of nucleic acids binding site prediction programs
Z Miao, E Westhof
PLoS computational biology 11 (12), e1004639, 2015
362015
BBKNN: fast batch alignment of single cell transcriptomes
K Polański, MD Young, Z Miao, KB Meyer, SA Teichmann, JE Park
Bioinformatics 36 (3), 964-965, 2020
152020
Genome-wide analyses reveal the IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation
J Pramanik, X Chen, G Kar, J Henriksson, T Gomes, JE Park, K Natarajan, ...
Genome medicine 10 (1), 1-19, 2018
122018
Assessment of batch-correction methods for scRNA-seq data with a new test metric
M Büttner, Z Miao, FA Wolf, SA Teichmann, FJ Theis
BioRxiv, 200345, 2017
122017
Comparative analysis of sequencing technologies for single-cell transcriptomics
KN Natarajan, Z Miao, M Jiang, X Huang, H Zhou, J Xie, C Wang, S Qin, ...
Genome biology 20 (1), 70, 2019
102019
Quantifying side-chain conformational variations in protein structure
Z Miao, Y Cao
Scientific reports 6 (1), 1-10, 2016
102016
RBscore&NBench: a high-level web server for nucleic acid binding residues prediction with a large-scale benchmarking database
Z Miao, E Westhof
Nucleic acids research 44 (W1), W562-W567, 2016
92016
Decoding human fetal liver haematopoiesis
DM Popescu, RA Botting, E Stephenson, K Green, S Webb, L Jardine, ...
Nature 574 (7778), 365-371, 2019
62019
Modeling of protein side-chain conformations with RASP
Z Miao, Y Cao, T Jiang
Protein Structure Prediction, 43-53, 2014
42014
Evaluation of Protein–Ligand Docking by Cyscore
Y Cao, W Dai, Z Miao
Computational Drug Discovery and Design, 233-243, 2018
22018
Assessment of batch-correction methods for scRNA-seq data with a new test metric. bioRxiv
M Büttner, Z Miao, A Wolf, SA Teichmann, FJ Theis
October, 2017
22017
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Articles 1–20