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Nathan C. Sheffield
Nathan C. Sheffield
Assoc. Prof. of Public Health Genomics, Biomedical Engineering, Data Science. University of Virginia
Bestätigte E-Mail-Adresse bei virginia.edu - Startseite
Titel
Zitiert von
Zitiert von
Jahr
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
138532012
The accessible chromatin landscape of the human genome
RE Thurman, E Rynes, R Humbert, J Vierstra, MT Maurano, E Haugen, ...
Nature 489 (7414), 75-82, 2012
30472012
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biology 9 (4), e1001046, 2011
14432011
The chromatin accessibility landscape of primary human cancers
MR Corces, JM Granja, S Shams, BH Louie, JA Seoane, W Zhou, ...
Science 362 (6413), eaav1898, 2018
9352018
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
L Song, Z Zhang, LL Grasfeder, AP Boyle, PG Giresi, BK Lee, ...
Genome research 21 (10), 1757-1767, 2011
6222011
ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors
C Schmidl, AF Rendeiro, NC Sheffield, C Bock
Nature methods 12 (10), 963-965, 2015
4662015
Single-cell DNA methylome sequencing and bioinformatic inference of epigenomic cell-state dynamics
M Farlik, NC Sheffield, A Nuzzo, P Datlinger, A Schönegger, ...
Cell reports 10 (8), 1386-1397, 2015
4492015
LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor
NC Sheffield, C Bock
Bioinformatics 32 (4), 587-589, 2016
3862016
Predicting cell-type–specific gene expression from regions of open chromatin
A Natarajan, GG Yardımcı, NC Sheffield, GE Crawford, U Ohler
Genome research 22 (9), 1711-1722, 2012
2932012
Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions
NC Sheffield, RE Thurman, L Song, A Safi, JA Stamatoyannopoulos, ...
Genome research 23 (5), 777-788, 2013
2602013
A comparative analysis of mitochondrial genomes in Coleoptera (Arthropoda: Insecta) and genome descriptions of six new beetles
NC Sheffield, H Song, SL Cameron, MF Whiting
Molecular biology and evolution 25 (11), 2499-2509, 2008
2582008
The DNA methylation landscape of glioblastoma disease progression shows extensive heterogeneity in time and space
J Klughammer, B Kiesel, T Roetzer, N Fortelny, A Nemc, KH Nenning, ...
Nature medicine 24 (10), 1611-1624, 2018
2562018
DNA methylation heterogeneity defines a disease spectrum in Ewing sarcoma
NC Sheffield, G Pierron, J Klughammer, P Datlinger, A Schönegger, ...
Nature medicine 23 (3), 386-395, 2017
2222017
Epigenome mapping reveals distinct modes of gene regulation and widespread enhancer reprogramming by the oncogenic fusion protein EWS-FLI1
EM Tomazou, NC Sheffield, C Schmidl, M Schuster, A Schönegger, ...
Cell reports 10 (7), 1082-1095, 2015
2192015
Nonstationary evolution and compositional heterogeneity in beetle mitochondrial phylogenomics
NC Sheffield, H Song, SL Cameron, MF Whiting
Systematic Biology 58 (4), 381-394, 2009
1742009
When phylogenetic assumptions are violated: base compositional heterogeneity and among‐site rate variation in beetle mitochondrial phylogenomics
H Song, NC Sheffield, SL Cameron, KB Miller, MF Whiting
Systematic Entomology 35 (3), 429-448, 2010
1602010
Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection
Y Shibata, NC Sheffield, O Fedrigo, CC Babbitt, M Wortham, AK Tewari, ...
PLoS genetics 8 (6), e1002789, 2012
1542012
Multi-omics of single cells: strategies and applications
C Bock, M Farlik, NC Sheffield
Trends in biotechnology 34 (8), 605-608, 2016
1382016
GA4GH: International policies and standards for data sharing across genomic research and healthcare
HL Rehm, AJH Page, L Smith, JB Adams, G Alterovitz, LJ Babb, ...
Cell genomics 1 (2), 2021
1322021
Single-cell epigenomic variability reveals functional cancer heterogeneity
UM Litzenburger, JD Buenrostro, B Wu, Y Shen, NC Sheffield, A Kathiria, ...
Genome biology 18, 1-12, 2017
1102017
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