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Stefan Schoenfelder
Stefan Schoenfelder
Career Progression Fellow at the Babraham Institute
Verified email at babraham.ac.uk - Homepage
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Cited by
Year
Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
T Nagano, Y Lubling, TJ Stevens, S Schoenfelder, E Yaffe, W Dean, ...
Nature 502 (7469), 59-64, 2013
15942013
Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C
B Mifsud, F Tavares-Cadete, AN Young, R Sugar, S Schoenfelder, ...
Nature genetics 47 (6), 598-606, 2015
9992015
Long-range enhancer–promoter contacts in gene expression control
S Schoenfelder, P Fraser
Nature Reviews Genetics 20 (8), 437-455, 2019
8442019
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
S Schoenfelder, T Sexton, L Chakalova, NF Cope, A Horton, S Andrews, ...
Nature genetics 42 (1), 53-61, 2010
8122010
Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins
G Wutz, C Várnai, K Nagasaka, DA Cisneros, RR Stocsits, W Tang, ...
The EMBO journal 36 (24), 3573-3599, 2017
6752017
HiCUP: pipeline for mapping and processing Hi-C data
S Wingett, P Ewels, M Furlan-Magaril, T Nagano, S Schoenfelder, ...
F1000Research 4, 2015
5302015
The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
S Schoenfelder, M Furlan-Magaril, B Mifsud, F Tavares-Cadete, R Sugar, ...
Genome research 25 (4), 582-597, 2015
4582015
CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data
J Cairns, P Freire-Pritchett, SW Wingett, C Várnai, A Dimond, V Plagnol, ...
Genome biology 17, 1-17, 2016
3902016
Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome
S Schoenfelder, R Sugar, A Dimond, BM Javierre, H Armstrong, B Mifsud, ...
Nature genetics 47 (10), 1179-1186, 2015
3762015
Global reorganization of the nuclear landscape in senescent cells
T Chandra, PA Ewels, S Schoenfelder, M Furlan-Magaril, SW Wingett, ...
Cell reports 10 (4), 471-483, 2015
3262015
Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C
NH Dryden, LR Broome, F Dudbridge, N Johnson, N Orr, S Schoenfelder, ...
Genome research 24 (11), 1854-1868, 2014
2722014
Capture Hi-C identifies the chromatin interactome of colorectal cancer risk loci
R Jäger, G Migliorini, M Henrion, R Kandaswamy, HE Speedy, A Heindl, ...
Nature communications 6 (1), 6178, 2015
2382015
Capture Hi-C reveals novel candidate genes and complex long-range interactions with related autoimmune risk loci
P Martin, A McGovern, G Orozco, K Duffus, A Yarwood, S Schoenfelder, ...
Nature communications 6 (1), 10069, 2015
2032015
Comparison of Hi-C results using in-solution versus in-nucleus ligation
T Nagano, C Várnai, S Schoenfelder, BM Javierre, SW Wingett, P Fraser
Genome biology 16, 1-13, 2015
1862015
The transcriptional interactome: gene expression in 3D
S Schoenfelder, I Clay, P Fraser
Current opinion in genetics & development 20 (2), 127-133, 2010
1712010
Hi-C as a tool for precise detection and characterisation of chromosomal rearrangements and copy number variation in human tumours
L Harewood, K Kishore, MD Eldridge, S Wingett, D Pearson, ...
Genome biology 18, 1-11, 2017
1562017
Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells
P Freire-Pritchett, S Schoenfelder, C Várnai, SW Wingett, J Cairns, ...
Elife 6, e21926, 2017
1512017
Cohesin-dependent and-independent mechanisms mediate chromosomal contacts between promoters and enhancers
MJ Thiecke, G Wutz, M Muhar, W Tang, S Bevan, V Malysheva, R Stocsits, ...
Cell reports 32 (3), 2020
1192020
ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL
G Wutz, R Ladurner, BG St Hilaire, RR Stocsits, K Nagasaka, B Pignard, ...
Elife 9, e52091, 2020
1162020
Promoter capture Hi-C: high-resolution, genome-wide profiling of promoter interactions
S Schoenfelder, BM Javierre, M Furlan-Magaril, SW Wingett, P Fraser
JoVE (Journal of Visualized Experiments), e57320, 2018
1092018
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