| The landscape of genomic alterations across childhood cancers SN Gröbner, BC Worst, J Weischenfeldt, I Buchhalter, K Kleinheinz, ... Nature 555 (7696), 321-327, 2018 | 635 | 2018 |
| Molecular recording of mammalian embryogenesis MM Chan, ZD Smith, S Grosswendt, H Kretzmer, TM Norman, B Adamson, ... Nature 570 (7759), 77-82, 2019 | 153 | 2019 |
| Metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data F Jühling, H Kretzmer, SH Bernhart, C Otto, PF Stadler, S Hoffmann Genome research 26 (2), 256-262, 2016 | 137 | 2016 |
| DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control H Kretzmer, SH Bernhart, W Wang, A Haake, MA Weniger, AK Bergmann, ... Nature genetics 47 (11), 1316-1325, 2015 | 118 | 2015 |
| MINCR is a MYC-induced lncRNA able to modulate MYC’s transcriptional network in Burkitt lymphoma cells G Doose, A Haake, SH Bernhart, C López, S Duggimpudi, F Wojciech, ... Proceedings of the National Academy of Sciences 112 (38), E5261-E5270, 2015 | 76 | 2015 |
| Changes of bivalent chromatin coincide with increased expression of developmental genes in cancer SH Bernhart, H Kretzmer, LM Holdt, F Jühling, O Ammerpohl, ... Scientific reports 6 (1), 1-18, 2016 | 74 | 2016 |
| Mouse embryonic stem cells self-organize into trunk-like structures with neural tube and somites JV Veenvliet, A Bolondi, H Kretzmer, L Haut, M Scholze-Wittler, D Schifferl, ... Science 370 (6522), 2020 | 58 | 2020 |
| Analysis of short tandem repeat expansions and their methylation state with nanopore sequencing P Giesselmann, B Brändl, E Raimondeau, R Bowen, C Rohrandt, ... Nature biotechnology 37 (12), 1478-1481, 2019 | 48 | 2019 |
| Genomic and transcriptomic changes complement each other in the pathogenesis of sporadic Burkitt lymphoma C López, K Kleinheinz, SM Aukema, M Rohde, SH Bernhart, ... Nature communications 10 (1), 1-19, 2019 | 47 | 2019 |
| Alterations of microRNA and microRNA-regulated messenger RNA expression in germinal center B-cell lymphomas determined by integrative sequencing analysis K Hezaveh, A Kloetgen, SH Bernhart, KD Mahapatra, D Lenze, J Richter, ... Haematologica 101 (11), 1380, 2016 | 42 | 2016 |
| Epigenetic regulator function through mouse gastrulation S Grosswendt, H Kretzmer, ZD Smith, AS Kumar, S Hetzel, L Wittler, ... Nature 584 (7819), 102-108, 2020 | 31 | 2020 |
| BAT: Bisulfite Analysis Toolkit: BAT is a toolkit to analyze DNA methylation sequencing data accurately and reproducibly. It covers standard processing and analysis steps from … H Kretzmer, C Otto, S Hoffmann F1000Research 6, 2017 | 8 | 2017 |
| Nanopype: a modular and scalable nanopore data processing pipeline P Giesselmann, S Hetzel, FJ Müller, A Meissner, H Kretzmer Bioinformatics 35 (22), 4770-4772, 2019 | 5 | 2019 |
| Preneoplastic alterations define CLL DNA methylome and persist through disease progression and therapy H Kretzmer, A Biran, N Purroy, C Lemvigh, K Clement, M Gruber, H Gu, ... Blood cancer discovery 2 (1), 54, 2021 | 4 | 2021 |
| Dissecting the DNA binding landscape and gene regulatory network of p63 and p53 K Riege, H Kretzmer, A Sahm, SS McDade, S Hoffmann, M Fischer Elife 9, e63266, 2020 | 4 | 2020 |
| Dnmt1 has de novo activity targeted to transposable elements C Haggerty, H Kretzmer, C Riemenschneider, AS Kumar, AL Mattei, ... Nature Structural & Molecular Biology, 1-10, 2021 | 2 | 2021 |
| The CLL-1100 project: towards complete genomic characterization and improved prognostics for CLL BA Knisbacher, Z Lin, CK Hahn, F Nadeu, M Duran-Ferrer, KE Stevenson, ... Blood 136, 3-4, 2020 | 2 | 2020 |
| Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas D Hübschmann, K Kleinheinz, R Wagener, SH Bernhart, C López, ... Leukemia, 1-15, 2021 | 1 | 2021 |
| Deciphering the Role of Locally Disordered DNA Methylation on CLL Development In Vivo A Biran, H Kretzmer, S Yin, L Billington, FF Regis, AW Mohammad, ... Blood, The Journal of the American Society of Hematology 134 (Supplement_1 …, 2019 | 1 | 2019 |
| RLM: Fast and simplified extraction of Read-Level Methylation metrics from bisulfite sequencing data S Hetzel, P Giesselmann, K Reinert, A Meissner, H Kretzmer Bioinformatics, 2021 | | 2021 |
