Follow
Jeff Thompson
Jeff Thompson
OpenEye, Cadence Molecular Sciences
Verified email at eyesopen.com
Title
Cited by
Cited by
Year
APOGEE: Global optimization of standard, generalized, and extended pooling problems via linear and logarithmic partitioning schemes
R Misener, JP Thompson, CA Floudas
Computers & Chemical Engineering 35 (5), 876-892, 2011
1662011
Forcefield_PTM: Ab Initio Charge and AMBER Forcefield Parameters for Frequently Occurring Post-Translational Modifications
GA Khoury, JP Thompson, J Smadbeck, CA Kieslich, CA Floudas
Journal of chemical theory and computation 9 (12), 5653-5674, 2013
1202013
CONCORD: a consensus method for protein secondary structure prediction via mixed integer linear optimization
Y Wei, J Thompson, CA Floudas
Proceedings of the Royal Society A: Mathematical, Physical and Engineering …, 2012
492012
WESTPA 2.0: High-performance upgrades for weighted ensemble simulations and analysis of longer-timescale applications
JD Russo, S Zhang, JMG Leung, AT Bogetti, JP Thompson, AJ DeGrave, ...
Journal of Chemical Theory and Computation 18 (2), 638-649, 2022
322022
2011
L Wei, J Thompson, CA Floudas
Stage bi de Pro incie Zuid-Holland.,(3), 20-21, 2011
152011
Mechanistic Insights into Passive Membrane Permeability of Drug-like Molecules from a Weighted Ensemble of Trajectories
S Zhang, JP Thompson, J Xia, AT Bogetti, F York, AG Skillman, LT Chong, ...
Journal of Chemical Information and Modeling 62 (8), 1891-1904, 2022
112022
System-size effects in ionic fluids under periodic boundary conditions
JP Thompson, IC Sanchez
The Journal of Chemical Physics 145 (21), 2016
62016
A Suite of Advanced Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v0. 1]
AT Bogetti, JMG Leung, JD Russo, S Zhang, JP Thompson, AS Saglam, ...
bioRxiv, 2022.10. 04.510803, 2022
52022
Codon selection affects recruitment of ribosome-associating factors during translation
AM Rojano-Nisimura, K Haning, J Janovsky, KA Vasquez, JP Thompson, ...
ACS Synthetic Biology 9 (2), 329-342, 2019
42019
A Suite of Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v2. 0]
AT Bogetti, JMG Leung, JD Russo, S Zhang, JP Thompson, AS Saglam, ...
Living journal of computational molecular science 5 (1), 2023
2023
A Lower Bound on the Partition Function for a Strictly Neutral Charge-Symmetric System
JP Thompson, IC Sanchez
Journal of Statistical Physics 177 (6), 1207-1215, 2019
2019
Putative role of attractive and repulsive forces in the glass transition
IC Sanchez, SP O'Keefe, JP Thompson
Polymer 135, 230-240, 2018
2018
Effects of periodic boundary conditions on the static properties of charged fluids
JP Thompson
The University of Texas at Austin, 2017
2017
Finite-size effects in simulations of electrolyte solutions under periodic boundary conditions
J Thompson, I Sanchez
APS March Meeting Abstracts 2017, M1. 336, 2017
2017
Publisher’s Note:“System-size effects in ionic fluids under periodic boundary conditions”[J. Chem. Phys. 145, 214103 (2016)]
JP Thompson, IC Sanchez
The Journal of Chemical Physics 146 (3), 039901, 2017
2017
Forcefield Ptm: Development and Testing of a First Generation AMBER Forcefield for Post-Translational Modifications
GA Khoury, JP Thompson, CA Floudas
AIChE Annual Meeting Abstracts, 2012
2012
EOS: A Mixed-Integer Linear Optimization Model for Single-Sequence Beta-Strand Prediction
JP Thompson
2010
The system can't perform the operation now. Try again later.
Articles 1–17