| Persistence images: A stable vector representation of persistent homology H Adams, T Emerson, M Kirby, R Neville, C Peterson, P Shipman, ... Journal of Machine Learning Research 18 (8), 1-35, 2017 | 787 | 2017 |
| An intrinsic oscillator drives the blood stage cycle of the malaria parasite Plasmodium falciparum LM Smith, FC Motta, G Chopra, JK Moch, RR Nerem, B Cummins, ... Science 368 (6492), 754-759, 2020 | 73 | 2020 |
| Highly ordered nanoscale surface ripples produced by ion bombardment of binary compounds FC Motta, PD Shipman, RM Bradley Journal of Physics D: Applied Physics 45 (12), 122001, 2012 | 38 | 2012 |
| Large-scale design and refinement of stable proteins using sequence-only models JM Singer, S Novotney, D Strickland, HK Haddox, N Leiby, GJ Rocklin, ... PloS one 17 (3), e0265020, 2022 | 24 | 2022 |
| Conservation and Diversification of Circadian Rhythmicity Between a Model Crassulacean Acid Metabolism Plant Kalanchoë fedtschenkoi and a Model C3 Photosynthesis … RC Moseley, R Mewalal, F Motta, GA Tuskan, S Haase, X Yang Frontiers in Plant Science 9, 1757, 2018 | 23 | 2018 |
| Theory of nanoscale pattern formation produced by oblique-incidence ion bombardment of binary compounds FC Motta, PD Shipman, RM Bradley Physical Review B 90 (8), 085428, 2014 | 21 | 2014 |
| Layers of regulation of cell-cycle gene expression in the budding yeast Saccharomyces cerevisiae CM Kelliher, MW Foster, FC Motta, A Deckard, EJ Soderblom, ... Molecular biology of the cell 29 (22), 2644-2655, 2018 | 18 | 2018 |
| Reconciling conflicting models for global control of cell-cycle transcription CY Cho, FC Motta, CM Kelliher, A Deckard, SB Haase Cell Cycle 16 (20), 1965-1978, 2017 | 18 | 2017 |
| Producing nanodot arrays with improved hexagonal order by patterning surfaces before ion sputtering DA Pearson, RM Bradley, FC Motta, PD Shipman Physical Review E 92 (6), 062401, 2015 | 18 | 2015 |
| Measures of order for nearly hexagonal lattices FC Motta, R Neville, PD Shipman, DA Pearson, RM Bradley Physica D: Nonlinear Phenomena 380, 17-30, 2018 | 17 | 2018 |
| Random cyclic dynamical systems M Adamaszek, H Adams, F Motta Advances in Applied Mathematics 83, 1-23, 2017 | 16 | 2017 |
| Assessment of simulated surveillance testing and quarantine in a SARS-CoV-2–vaccinated population of students on a university campus FC Motta, KA McGoff, A Deckard, CR Wolfe, M Bonsignori, MA Moody, ... JAMA health forum 2 (10), e213035-e213035, 2021 | 12 | 2021 |
| Critical and ictal phases in simulated EEG signals on a small-world network LR Nemzer, GD Cravens, RM Worth, F Motta, A Placzek, V Castro, JQ Lou Frontiers in Computational Neuroscience 14, 583350, 2021 | 10 | 2021 |
| Optimally topologically transitive orbits in discrete dynamical systems FC Motta, PD Shipman, BD Springer The American Mathematical Monthly 123 (2), 115-135, 2016 | 7 | 2016 |
| Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop B Cummins, J Vrana, RC Moseley, H Eramian, A Deckard, ... Synthetic Biology 8 (1), ysad005, 2023 | 6 | 2023 |
| Topological data analysis: developments and applications FC Motta Advances in Nonlinear Geosciences, 369-391, 2018 | 6 | 2018 |
| Conservation of dynamic characteristics of transcriptional regulatory elements in periodic biological processes FC Motta, RC Moseley, B Cummins, A Deckard, SB Haase BMC bioinformatics 23 (1), 94, 2022 | 5 | 2022 |
| Hyperparameter optimization of topological features for machine learning applications F Motta, C Tralie, R Bedini, F Bini, G Bini, H Eramian, M Gameiro, ... 2019 18th IEEE international conference on machine learning and applications …, 2019 | 5 | 2019 |
| Inference of Gene Regulatory Network Uncovers the Linkage between Circadian Clock and Crassulacean Acid Metabolism in Kalanchoë fedtschenkoi RC Moseley, F Motta, GA Tuskan, SB Haase, X Yang Cells 10 (9), 2217, 2021 | 4 | 2021 |
| Improved datasets and evaluation methods for the automatic prediction of DNA-binding proteins A Zaitzeff, N Leiby, FC Motta, SB Haase, JM Singer Bioinformatics 38 (1), 44-51, 2022 | 3 | 2022 |
