David Koslicki

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	All	Since 2016
Citations	817	735
h-index	13	12
i10-index	15	14

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Serghei MangulAssistant Professor at USCVerified email at usc.edu
Simon FoucartProfessor of Mathematics, Texas A&M UniversityVerified email at tamu.edu
Eleazar EskinUniversity of California, Los AngelesVerified email at cs.ucla.edu
Gail RosenProfessor of ECE, Drexel UniversityVerified email at ece.drexel.edu
Saikat ChatterjeeKTH - Royal Institute of TechnologyVerified email at kth.se
mikko VehkaperaSenior Scientist, VTT Technical Research Centre of FinlandVerified email at vtt.fi
Roel A. OphoffProfessor of Psychiatry and Human Genetics, University of California Los AngelesVerified email at ucla.edu
Anil OriUniversity Medical Center GroningenVerified email at umcg.nl
Willem M de VosProfessor @ Microbiology Wageningen Netherlands @Helsinki FinlandVerified email at wur.nl
Loes Olde LoohuisAssistant professor at UCLAVerified email at mednet.ucla.edu
Alice Carolyn McHardyHelmholtz Centre for Infection ResearchVerified email at helmholtz-hzi.de
Christopher Clemens MayerAIT Austrian Institute of Technology GmbH, Center for Health & Bioresources, Biomedical SystemsVerified email at ait.ac.at
Martin BachlerResearch Engineer, AIT Austrian Institute of Technology GmbH, Center for Health & BioresourcesVerified email at ait.ac.at
Daniel FalushInstitute Pasteur ShanghaiVerified email at ips.ac.cn
Alan WalkerSenior Lecturer, Rowett Institute, University of AberdeenVerified email at abdn.ac.uk
Mikael SkoglundKTH Royal Institute of TechnologyVerified email at ee.kth.se
Erik AurellProfessor of Biological Physics, KTH-Royal Institute of TechnologyVerified email at kth.se
Lars K. RasmussenProfessor, KTH Royal Institute of TechnologyVerified email at ieee.org
Mark NovakOregon State UniversityVerified email at oregonstate.edu
Molly MegrawCenter for Genome Research & Biocomputing, Oregon State UniversityVerified email at science.oregonstate.edu

David Koslicki

Computer Science and Engineering, Biology, Huck Institutes of the Life Sciences, Penn State

Verified email at psu.edu - Homepage

Computational genomics Metagenomics Probability Compressive sensing


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Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017	341	2017
Sparse recovery by means of nonnegative least squares S Foucart, D Koslicki IEEE Signal Processing Letters 21 (4), 498-502, 2014	55	2014
Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing D Koslicki, S Foucart, G Rosen Bioinformatics 29 (17), 2096-2102, 2013	49	2013
Topological entropy of DNA sequences D Koslicki Bioinformatics 27 (8), 1061-1067, 2011	49	2011
On entropy-based data mining A Holzinger, M Hörtenhuber, C Mayer, M Bachler, S Wassertheurer, ... Interactive Knowledge Discovery and Data Mining in Biomedical Informatics …, 2014	46	2014
Transcriptome analysis in whole blood reveals increased microbial 1 diversity in schizophrenia LMO Loohuis, S Mangul, A Ori, G Jospin, D Koslicki, HT Yang, T Wu, ... Nature Translational Psychiatry 8 (96), 9, 2018	40*	2018
WGSQuikr: fast whole-genome shotgun metagenomic classification D Koslicki, S Foucart, G Rosen PloS one 9 (3), e91784, 2014	40	2014
MetaPalette: a k-mer painting approach for metagenomic taxonomic profiling and quantification of novel strain variation D Koslicki, D Falush MSystems 1 (3), 2016	32	2016
Assessing taxonomic metagenome profilers with OPAL F Meyer, A Bremges, P Belmann, S Janssen, AC McHardy, D Koslicki Genome biology 20 (1), 1-10, 2019	24	2019
Striped UniFrac: enabling microbiome analysis at unprecedented scale D McDonald, Y Vázquez-Baeza, D Koslicki, J McClelland, N Reeve, Z Xu, ... Nature methods 15 (11), 847-848, 2018	21	2018
Toward a universal biomedical data translator TBDT Consortium Clinical and Translational Science, 1--5, 2018	20*	2018
SEK: Sparsity exploiting k-mer-based estimation of bacterial community composition S Chatterjee, D Koslicki, S Dong, N Innocenti, L Cheng, Y Lan, ... Bioinformatics; accepted with Minor Revision on 18-03-2014, 2014	17	2014
Improving minhash via the containment index with applications to metagenomic analysis D Koslicki, H Zabeti Applied Mathematics and Computation 354, 206-215, 2019	13	2019
EMDUniFrac: exact linear time computation of the unifrac metric and identification of differentially abundant organisms J McClelland, D Koslicki Journal of mathematical biology 77 (4), 935-949, 2018	11	2018
Coding sequence density estimation via topological pressure D Koslicki, DJ Thompson Journal of mathematical biology 70 (1-2), 45-69, 2015	11	2015
ARK: aggregation of reads by k-means for estimation of bacterial community composition D Koslicki, S Chatterjee, D Shahrivar, AW Walker, SC Francis, LJ Fraser, ... PloS one 10 (10), e0140644, 2015	8*	2015
SUBSTITUTION MARKOV CHAINS WITH APPLICATIONS TO MOLECULAR EVOLUTION D Koslicki The Pennsylvania State University, 2012	8	2012
Exact probabilities for the indeterminacy of complex networks as perceived through press perturbations D Koslicki, M Novak Journal of mathematical biology 76 (4), 877-909, 2018	6	2018
Leveraging Distributed Biomedical Knowledge Sources to Discover Novel Uses for Known Drugs F Womack, J McClelland, D Koslicki bioRxiv, 765305, 2019	5	2019
IndeCut evaluates performance of network motif discovery algorithms M Ansariola, M Megraw, D Koslicki Bioinformatics 34 (9), 1514-1521, 2018	5	2018

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