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William DeWitt
William DeWitt
McDonnell Foundation Fellow, UC Berkeley, EECS
Verified email at berkeley.edu - Homepage
Title
Cited by
Cited by
Year
A single-cell atlas of in vivo mammalian chromatin accessibility
DA Cusanovich, AJ Hill, D Aghamirzaie, RM Daza, HA Pliner, JB Berletch, ...
Cell 174 (5), 1309-1324. e18, 2018
6692018
Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire
RO Emerson, WS DeWitt, M Vignali, J Gravley, JK Hu, EJ Osborne, ...
Nature genetics 49 (5), 659-665, 2017
4442017
Dynamics of the cytotoxic T cell response to a model of acute viral infection
WS DeWitt, RO Emerson, P Lindau, M Vignali, TM Snyder, C Desmarais, ...
Journal of virology 89 (8), 4517-4526, 2015
1532015
A public database of memory and naive B-cell receptor sequences
WS DeWitt, P Lindau, TM Snyder, AM Sherwood, M Vignali, CS Carlson, ...
PloS one 11 (8), e0160853, 2016
1442016
Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity
W DeWitt, A Smith, G Schoch, J Hansen, F Matsen, P Bradley
eLife, 2018
1272018
Deep generative models for T cell receptor protein sequences
K Davidsen, BJ Olson, WS DeWitt III, J Feng, E Harkins, P Bradley, ...
Elife 8, e46935, 2019
672019
Using genotype abundance to improve phylogenetic inference
WS DeWitt III, L Mesin, GD Victora, VN Minin, FA Matsen IV
Molecular biology and evolution 35 (5), 1253-1265, 2018
582018
Dynamics of B cell repertoires and emergence of cross-reactive responses in patients with different severities of COVID-19
Z Montague, H Lv, J Otwinowski, WS DeWitt, G Isacchini, GK Yip, WW Ng, ...
Cell Reports 35 (8), 109173, 2021
44*2021
Nonparametric coalescent inference of mutation spectrum history and demography
WS DeWitt, KD Harris, AP Ragsdale, K Harris
Proceedings of the National Academy of Sciences 118 (21), e2013798118, 2021
37*2021
Increased mutation and gene conversion within human segmental duplications
MR Vollger, PC Dishuck, WT Harvey, WS DeWitt, X Guitart, ME Goldberg, ...
Nature 617 (7960), 325-334, 2023
34*2023
A diverse lipid antigen–specific TCR repertoire is clonally expanded during active tuberculosis
WS DeWitt, KKQ Yu, DB Wilburn, A Sherwood, M Vignali, CL Day, ...
The Journal of Immunology 201 (3), 888-896, 2018
322018
Imaging protein statistical substate occupancy in a spectrum-function phase space
W DeWitt, K Chu
Physical review letters 105 (9), 098101, 2010
30*2010
Estimation of cell lineage trees by maximum-likelihood phylogenetics
J Feng, WS DEWITT III, A McKenna, N Simon, AD Willis, FA MATSEN IV
The annals of applied statistics 15 (1), 343, 2021
272021
Multiplexed digital quantitation of rearranged lymphoid receptors in a complex mixture
WS Dewitt, RO Emerson, HS Robins, AM Sherwood
US Patent 10,246,701, 2019
222019
Inferring evolutionary dynamics of mutation rates through the lens of mutation spectrum variation
J Carlson, WS DeWitt, K Harris
Current Opinion in Genetics & Development 62, 50-57, 2020
202020
Methods for diagnosing infectious disease and determining HLA status using immune repertoire sequencing
RO Emerson, HS Robins, M Rieder, W Dewitt III, C Carlson
US Patent 11,047,008, 2021
192021
A biophysical model of viral escape from polyclonal antibodies
TC Yu, ZT Thornton, WW Hannon, WS DeWitt, CE Radford, FA Matsen IV, ...
Virus Evolution 8 (2), veac110, 2022
162022
mutyper: assigning and summarizing mutation types for analyzing germline mutation spectra
WS DeWitt, L Zhu, MR Vollger, ME Goldberg, A Talenti, AC Beichman, ...
Journal of Open Source Software 8 (85), 5227, 2023
52023
Replicate immunosequencing as a robust probe of B cell repertoire diversity
W DeWitt, P Lindau, T Snyder, M Vignali, R Emerson, H Robins
arXiv preprint arXiv:1410.0350, 2014
42014
Jointly modeling deep mutational scans identifies shifted mutational effects among SARS-CoV-2 spike homologs
HK Haddox, JG Galloway, B Dadonaite, JD Bloom, FA Matsen IV, ...
bioRxiv, 2023
32023
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