Pejman Mohammadi
Pejman Mohammadi
Assistant professor, The Scripps Research Institute
Verified email at - Homepage
Cited by
Cited by
Genetic effects on gene expression across human tissues
GTEx Consortium
Nature 550 (7675), 204, 2017
Dynamic landscape and regulation of RNA editing in mammals
MH Tan, Q Li, R Shanmugam, R Piskol, J Kohler, AN Young, KI Liu, ...
Nature 550 (7675), 249-254, 2017
Tools and best practices for data processing in allelic expression analysis
SE Castel, A Levy-Moonshine, P Mohammadi, E Banks, T Lappalainen
Genome biology 16 (1), 195, 2015
A primer on deep learning in genomics
J Zou, M Huss, A Abid, P Mohammadi, A Torkamani, A Telenti
Nature genetics 51 (1), 12-18, 2019
IFI16 is required for DNA sensing in human macrophages by promoting production and function of cGAMP
KL Jønsson, A Laustsen, C Krapp, KA Skipper, K Thavachelvam, D Hotter, ...
Nature communications 8 (1), 1-17, 2017
24 hours in the life of HIV-1 in a T cell line
P Mohammadi, S Desfarges, I Bartha, B Joos, N Zangger, M Muñoz, ...
PLoS Pathog 9 (1), e1003161, 2013
The GTEx Consortium atlas of genetic regulatory effects across human tissues
GTEx Consortium
Science 369 (6509), 1318-1330, 2020
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
A Saha, Y Kim, ADH Gewirtz, B Jo, C Gao, IC McDowell, BE Engelhardt, ...
Genome research 27 (11), 1843-1858, 2017
Modified penetrance of coding variants by cis-regulatory variation contributes to disease risk
SE Castel, A Cervera, P Mohammadi, F Aguet, F Reverter, A Wolman, ...
Nature genetics 50 (9), 1327-1334, 2018
Genetic regulatory effects modified by immune activation contribute to autoimmune disease associations
S Kim-Hellmuth, M Bechheim, B Pütz, P Mohammadi, Y Nédélec, ...
Nature communications 8 (1), 1-10, 2017
Dynamics of HIV latency and reactivation in a primary CD4+ T cell model
P Mohammadi, J Di Iulio, M Munoz, R Martinez, I Bartha, M Cavassini, ...
PLoS Pathog 10 (5), e1004156, 2014
Quantifying the regulatory effect size of cis-acting genetic variation using allelic fold change
P Mohammadi, SE Castel, AA Brown, T Lappalainen
Genome research 27 (11), 1872-1884, 2017
TiMEx: A Waiting Time Model for Mutually Exclusive Cancer Alterations
S Constantinescu, E Szczurek, P Mohammadi, J Rahnenführer, ...
Bioinformatics, 2015
Local genetic effects on gene expression across 44 human tissues
F Aguet, AA Brown, S Castel, JR Davis, P Mohammadi, AV Segre, ...
BiorXiv, 074450, 2016
Rare variant phasing and haplotypic expression from RNA sequencing with phASER
SE Castel, P Mohammadi, WK Chung, Y Shen, T Lappalainen
Nature communications 7 (1), 1-6, 2016
Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis
F Yang, J Wang, BL Pierce, LS Chen, F Aguet, KG Ardlie, BB Cummings, ...
Genome research 27 (11), 1859-1871, 2017
Analysis of stop-gain and frameshift variants in human innate immunity genes
A Rausell, P Mohammadi, PJ McLaren, I Bartha, I Xenarios, J Fellay, ...
PLoS Comput Biol 10 (7), e1003757, 2014
Automated design of synthetic cell classifier circuits using a two-step optimization strategy
P Mohammadi, N Beerenwinkel, Y Benenson
Cell systems 4 (2), 207-218. e14, 2017
Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay
W Trypsteen, P Mohammadi, C Van Hecke, P Mestdagh, S Lefever, ...
Scientific reports 6, 36111, 2016
Genetic regulatory variation in populations informs transcriptome analysis in rare disease
P Mohammadi, SE Castel, BB Cummings, J Einson, C Sousa, P Hoffman, ...
Science 366 (6463), 351-356, 2019
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