Pejman Mohammadi
Pejman Mohammadi
Associate Professor, Scripps Research
Verified email at scripps.edu - Homepage
Title
Cited by
Cited by
Year
Genetic effects on gene expression across human tissues
GTEx Consortium
Nature 550 (7675), 204, 2017
13442017
Dynamic landscape and regulation of RNA editing in mammals
MH Tan, Q Li, R Shanmugam, R Piskol, J Kohler, AN Young, KI Liu, ...
Nature 550 (7675), 249-254, 2017
2562017
The GTEx Consortium atlas of genetic regulatory effects across human tissues
GTEx Consortium
Science 369 (6509), 1318-1330, 2020
2532020
A primer on deep learning in genomics
J Zou, M Huss, A Abid, P Mohammadi, A Torkamani, A Telenti
Nature genetics 51 (1), 12-18, 2019
2522019
Tools and best practices for data processing in allelic expression analysis
SE Castel, A Levy-Moonshine, P Mohammadi, E Banks, T Lappalainen
Genome biology 16 (1), 1-12, 2015
2312015
IFI16 is required for DNA sensing in human macrophages by promoting production and function of cGAMP
KL Jønsson, A Laustsen, C Krapp, KA Skipper, K Thavachelvam, D Hotter, ...
Nature communications 8 (1), 1-17, 2017
1692017
24 hours in the life of HIV-1 in a T cell line
P Mohammadi, S Desfarges, I Bartha, B Joos, N Zangger, M Muñoz, ...
PLoS Pathog 9 (1), e1003161, 2013
1362013
Modified penetrance of coding variants by cis-regulatory variation contributes to disease risk
SE Castel, A Cervera, P Mohammadi, F Aguet, F Reverter, A Wolman, ...
Nature genetics 50 (9), 1327-1334, 2018
1052018
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
A Saha, Y Kim, ADH Gewirtz, B Jo, C Gao, IC McDowell, BE Engelhardt, ...
Genome research 27 (11), 1843-1858, 2017
1052017
Genetic regulatory effects modified by immune activation contribute to autoimmune disease associations
S Kim-Hellmuth, M Bechheim, B Pütz, P Mohammadi, Y Nédélec, ...
Nature communications 8 (1), 1-10, 2017
872017
Dynamics of HIV latency and reactivation in a primary CD4+ T cell model
P Mohammadi, J Di Iulio, M Munoz, R Martinez, I Bartha, M Cavassini, ...
PLoS Pathog 10 (5), e1004156, 2014
732014
Local genetic effects on gene expression across 44 human tissues
F Aguet, AA Brown, S Castel, JR Davis, P Mohammadi, AV Segre, ...
BiorXiv, 074450, 2016
652016
Quantifying the regulatory effect size of cis-acting genetic variation using allelic fold change
P Mohammadi, SE Castel, AA Brown, T Lappalainen
Genome research 27 (11), 1872-1884, 2017
602017
Rare variant phasing and haplotypic expression from RNA sequencing with phASER
SE Castel, P Mohammadi, WK Chung, Y Shen, T Lappalainen
Nature communications 7 (1), 1-6, 2016
552016
TiMEx: A Waiting Time Model for Mutually Exclusive Cancer Alterations
S Constantinescu, E Szczurek, P Mohammadi, J Rahnenführer, ...
Bioinformatics, 2015
532015
Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis
F Yang, J Wang, BL Pierce, LS Chen, F Aguet, KG Ardlie, BB Cummings, ...
Genome research 27 (11), 1859-1871, 2017
462017
Genetic regulatory variation in populations informs transcriptome analysis in rare disease
P Mohammadi, SE Castel, BB Cummings, J Einson, C Sousa, P Hoffman, ...
Science 366 (6463), 351-356, 2019
352019
Transcriptomic signatures across human tissues identify functional rare genetic variation
NM Ferraro, BJ Strober, J Einson, NS Abell, F Aguet, AN Barbeira, ...
Science 369 (6509), 2020
32*2020
The impact of sex on gene expression across human tissues
M Oliva, M Muñoz-Aguirre, S Kim-Hellmuth, V Wucher, ADH Gewirtz, ...
Science 369 (6509), 2020
312020
Analysis of stop-gain and frameshift variants in human innate immunity genes
A Rausell, P Mohammadi, PJ McLaren, I Bartha, I Xenarios, J Fellay, ...
PLoS Comput Biol 10 (7), e1003757, 2014
292014
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