Lucas Czech
Title
Cited by
Cited by
Year
EPA-ng: massively parallel evolutionary placement of genetic sequences
P Barbera, AM Kozlov, L Czech, B Morel, D Darriba, T Flouri, ...
Systematic biology 68 (2), 365-369, 2019
1812019
Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests
F Mahé, C de Vargas, D Bass, L Czech, A Stamatakis, E Lara, D Singer, ...
Nature ecology & evolution 1 (4), 1-8, 2017
1632017
Clarifying the relationships between Microsporidia and Cryptomycota
D Bass, L Czech, BAP Williams, C Berney, M Dunthorn, F Mahé, ...
Journal of Eukaryotic Microbiology 65 (6), 773-782, 2018
702018
Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) data
L Czech, P Barbera, A Stamatakis
Bioinformatics 36 (10), 3263-3265, 2020
582020
Scalable methods for analyzing and visualizing phylogenetic placement of metagenomic samples
L Czech, A Stamatakis
PLoS One 14 (5), e0217050, 2019
522019
Phylogenetic analysis of SARS-CoV-2 data is difficult
B Morel, P Barbera, L Czech, B Bettisworth, L Hübner, S Lutteropp, ...
Molecular biology and evolution 38 (5), 1777-1791, 2021
492021
UniEuk: Time to Speak a Common Language in Protistology!
C Berney, A Ciuprina, S Bender, J Brodie, V Edgcomb, E Kim, J Rajan, ...
Journal of Eukaryotic Microbiology 64 (3), 407-411, 2017
492017
Long‐read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity
M Jamy, R Foster, P Barbera, L Czech, A Kozlov, A Stamatakis, ...
Molecular ecology resources 20 (2), 429-443, 2020
362020
Quartet-based computations of internode certainty provide accurate and robust measures of phylogenetic incongruence
X Zhou, S Lutteropp, L Czech, A Stamatakis, M von Looz, A Rokas
Systematic Biology 69 (2), 308-324, 2019
26*2019
Methods for automatic reference trees and multilevel phylogenetic placement
L Czech, P Barbera, A Stamatakis
Bioinformatics 35 (7), 1151-1158, 2019
262019
A critical review on the use of support values in tree viewers and bioinformatics toolkits
L Czech, J Huerta-Cepas, A Stamatakis
Molecular biology and evolution 34 (6), 1535-1542, 2017
212017
A System for Recognizing Natural Spelling of English Words
L Czech, T Köhler, S Stüker, A Waibel
Links, 2014
42014
SCRAPP: A tool to assess the diversity of microbial samples from phylogenetic placements
P Barbera, L Czech, S Lutteropp, A Stamatakis
Molecular ecology resources 21 (1), 340-349, 2021
32021
Swarm v3: towards tera-scale amplicon clustering
F Mahé, L Czech, A Stamatakis, C Quince, C de Vargas, M Dunthorn, ...
Bioinformatics, 2021
12021
An Efficient Approach to Merging Paired-End Reads and Incorporation of Uncertainties
T Flouri, J Zhang, L Czech, K Kobert, A Stamatakis
Algorithms for Next-Generation Sequencing Data, 299-325, 2017
12017
Quantifying the scale of genetic diversity extinction in the Anthropocene
M Exposito-Alonso, TA Booker, L Czech, T Fukami, L Gillespie, S Hateley, ...
bioRxiv, 2021
2021
grenepipe: A flexible, scalable, and reproducible pipeline to automate variant and frequency calling from sequence reads
L Czech, M Exposito-Alonso
arXiv preprint arXiv:2103.15167, 2021
2021
The Windblown: Possible explanations for dinophyte DNA in forest soils
M Gottschling, L Czech, F Mahé, S Adl, M Dunthorn
Journal of Eukaryotic Microbiology 68 (1), e12833, 2021
2021
Novel Methods for Analyzing and Visualizing Phylogenetic Placements
L Czech
Karlsruhe Institute of Technology, 2020
2020
A Study of Distance Measures for Clustering Generalized Polyphones
L Czech, S Stüker, A Waibel
Karlsruhe Institute of Technology, Interactive Systems Labs, 2012
2012
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Articles 1–20