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Lucas Czech
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EPA-ng: massively parallel evolutionary placement of genetic sequences
P Barbera, AM Kozlov, L Czech, B Morel, D Darriba, T Flouri, ...
Systematic biology 68 (2), 365-369, 2019
2742019
Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests
F Mahé, C de Vargas, D Bass, L Czech, A Stamatakis, E Lara, D Singer, ...
Nature ecology & evolution 1 (4), 1-8, 2017
2022017
Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) data
L Czech, P Barbera, A Stamatakis
Bioinformatics 36 (10), 3263-3265, 2020
1052020
Phylogenetic analysis of SARS-CoV-2 data is difficult
B Morel, P Barbera, L Czech, B Bettisworth, L Hübner, S Lutteropp, ...
Molecular biology and evolution 38 (5), 1777-1791, 2021
1032021
Clarifying the relationships between Microsporidia and Cryptomycota
D Bass, L Czech, BAP Williams, C Berney, M Dunthorn, F Mahé, ...
Journal of Eukaryotic Microbiology 65 (6), 773-782, 2018
942018
Long‐read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity
M Jamy, R Foster, P Barbera, L Czech, A Kozlov, A Stamatakis, ...
Molecular Ecology Resources 20 (2), 429-443, 2020
652020
Scalable methods for analyzing and visualizing phylogenetic placement of metagenomic samples
L Czech, A Stamatakis
PLoS One 14 (5), e0217050, 2019
632019
UniEuk: Time to Speak a Common Language in Protistology!
C Berney, A Ciuprina, S Bender, J Brodie, V Edgcomb, E Kim, J Rajan, ...
Journal of Eukaryotic Microbiology 64 (3), 407-411, 2017
562017
Quartet-based computations of internode certainty provide accurate and robust measures of phylogenetic incongruence
X Zhou, S Lutteropp, L Czech, A Stamatakis, M von Looz, A Rokas
Systematic Biology 69 (2), 308-324, 2019
35*2019
Methods for automatic reference trees and multilevel phylogenetic placement
L Czech, P Barbera, A Stamatakis
Bioinformatics 35 (7), 1151-1158, 2019
282019
A critical review on the use of support values in tree viewers and bioinformatics toolkits
L Czech, J Huerta-Cepas, A Stamatakis
Molecular biology and evolution 34 (6), 1535-1542, 2017
272017
A System for Recognizing Natural Spelling of English Words
L Czech, T Köhler, S Stüker, A Waibel
Links, 2014
202014
Swarm v3: towards tera-scale amplicon clustering
F Mahé, L Czech, A Stamatakis, C Quince, C de Vargas, M Dunthorn, ...
Bioinformatics 38 (1), 267-269, 2022
112022
The windblown: possible explanations for dinophyte DNA in forest soils
M Gottschling, L Czech, F Mahé, S Adl, M Dunthorn
Journal of Eukaryotic Microbiology 68 (1), e12833, 2021
62021
Genetic diversity loss in the Anthropocene
M Exposito-Alonso, TR Booker, L Czech, L Gillespie, S Hateley, ...
Science 377 (6613), 1431-1435, 2022
5*2022
SCRAPP: A tool to assess the diversity of microbial samples from phylogenetic placements
P Barbera, L Czech, S Lutteropp, A Stamatakis
Molecular ecology resources 21 (1), 340-349, 2021
52021
grenepipe: a flexible, scalable and reproducible pipeline to automate variant calling from sequence reads
L Czech, M Exposito-Alonso
Bioinformatics, 2022
3*2022
Metagenomic Analysis Using Phylogenetic Placement—A Review of the First Decade
L Czech, A Stamatakis, M Dunthorn, P Barbera
Frontiers in Bioinformatics 2 (871393), 2022
32022
Monitoring rapid evolution of plant populations at scale with Pool-Sequencing
L Czech*, Y Peng*, JP Spence, PLM Lang, T Bellagio, J Hildebrandt, ...
bioRxiv, 2022.02.02.477408, 2022
12022
Novel Methods for Analyzing and Visualizing Phylogenetic Placements
L Czech
Karlsruhe Institute of Technology, 2020
12020
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Articles 1–20