Guillaume Holley
Guillaume Holley
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Long-read sequencing of 3,622 Icelanders provides insight into the role of structural variants in human diseases and other traits
D Beyter, H Ingimundardottir, A Oddsson, HP Eggertsson, E Bjornsson, ...
Nature Genetics 53 (6), 779-786, 2021
Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage
G Holley, R Wittler, J Stoye
Algorithms for Molecular Biology 11 (1), 1-9, 2016
Bifrost: highly parallel construction and indexing of colored and compacted de Bruijn graphs
G Holley, P Melsted
Genome biology 21 (1), 1-20, 2020
Pan-genome storage and analysis techniques
T Zekic, G Holley, J Stoye
Comparative Genomics, 29-53, 2018
Dynamic alignment-free and reference-free read compression
G Holley, R Wittler, J Stoye, F Hach
Journal of Computational Biology 25 (7), 825-836, 2018
Ratatosk: hybrid error correction of long reads enables accurate variant calling and assembly
G Holley, D Beyter, H Ingimundardottir, PL M°ller, S Kristmundsdottir, ...
Genome Biology 22 (1), 1-22, 2021
BlastGraph: intensive approximate pattern matching in string graphs and de-Bruijn graphs
G Holley, P Peterlongo
PSC 2012, 2012
BlastFrost: fast querying of 100,000 s of bacterial genomes in Bifrost graphs
N Luhmann, G Holley, M Achtman
Genome biology 22 (1), 1-15, 2021
The sequences of 150,119 genomes in the UK biobank
BV Halldorsson, HP Eggertsson, KHS Moore, H Hauswedell, O Eiriksson, ...
bioRxiv, 2021
Benchmarking small variant detection with ONT reveals high performance in challenging regions
PL M°ller, G Holley, D Beyter, M Nyegaard, BV Halldˇrsson
bioRxiv, 2020
Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
T Krannich, WTJ White, S Niehus, G Holley, BV Halldˇrsson, B Kehr
Bioinformatics 38 (3), 604-611, 2022
Pan-genome Search and Storage
G Holley
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