| MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis H Tsugawa, T Cajka, T Kind, Y Ma, B Higgins, K Ikeda, M Kanazawa, ... Nature methods 12 (6), 523-526, 2015 | 2255 | 2015 |
| Feature-based molecular networking in the GNPS analysis environment LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ... Nature methods 17 (9), 905-908, 2020 | 795 | 2020 |
| Hydrogen rearrangement rules: computational MS/MS fragmentation and structure elucidation using MS-FINDER software H Tsugawa, T Kind, R Nakabayashi, D Yukihira, W Tanaka, T Cajka, ... Analytical chemistry 88 (16), 7946-7958, 2016 | 560 | 2016 |
| A lipidome atlas in MS-DIAL 4 H Tsugawa, K Ikeda, M Takahashi, A Satoh, Y Mori, H Uchino, ... Nature biotechnology 38 (10), 1159-1163, 2020 | 489 | 2020 |
| Identifying metabolites by integrating metabolome databases with mass spectrometry cheminformatics Z Lai, H Tsugawa, G Wohlgemuth, S Mehta, M Mueller, Y Zheng, ... Nature methods 15 (1), 53-56, 2018 | 453 | 2018 |
| Identification of small molecules using accurate mass MS/MS search T Kind, H Tsugawa, T Cajka, Y Ma, Z Lai, SS Mehta, G Wohlgemuth, ... Mass spectrometry reviews 37 (4), 513-532, 2018 | 406 | 2018 |
| Current metabolomics: technological advances SP Putri, S Yamamoto, H Tsugawa, E Fukusaki Journal of bioscience and bioengineering 116 (1), 9-16, 2013 | 241 | 2013 |
| GC/MS based metabolomics: development of a data mining system for metabolite identification by using soft independent modeling of class analogy (SIMCA) H Tsugawa, Y Tsujimoto, M Arita, T Bamba, E Fukusaki BMC bioinformatics 12, 1-13, 2011 | 236 | 2011 |
| A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms H Tsugawa, R Nakabayashi, T Mori, Y Yamada, M Takahashi, A Rai, ... Nature methods 16 (4), 295-298, 2019 | 226 | 2019 |
| Critical assessment of small molecule identification 2016: automated methods EL Schymanski, C Ruttkies, M Krauss, C Brouard, T Kind, K Dührkop, ... Journal of cheminformatics 9, 1-21, 2017 | 184 | 2017 |
| Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment R Schmid, D Petras, LF Nothias, M Wang, AT Aron, A Jagels, H Tsugawa, ... Nature communications 12 (1), 3832, 2021 | 153 | 2021 |
| Retip: retention time prediction for compound annotation in untargeted metabolomics P Bonini, T Kind, H Tsugawa, DK Barupal, O Fiehn Analytical chemistry 92 (11), 7515-7522, 2020 | 148 | 2020 |
| Bulk RNA degradation by nitrogen starvation‐induced autophagy in yeast H Huang, T Kawamata, T Horie, H Tsugawa, Y Nakayama, Y Ohsumi, ... The EMBO journal 34 (2), 154-168, 2015 | 138 | 2015 |
| Practical non-targeted gas chromatography/mass spectrometry-based metabolomics platform for metabolic phenotype analysis H Tsugawa, T Bamba, M Shinohara, S Nishiumi, M Yoshida, E Fukusaki Journal of bioscience and bioengineering 112 (3), 292-298, 2011 | 135 | 2011 |
| MRMPROBS: a data assessment and metabolite identification tool for large-scale multiple reaction monitoring based widely targeted metabolomics H Tsugawa, M Arita, M Kanazawa, A Ogiwara, T Bamba, E Fukusaki Analytical chemistry 85 (10), 5191-5199, 2013 | 105 | 2013 |
| Comprehensive comparison of in silico MS/MS fragmentation tools of the CASMI contest: database boosting is needed to achieve 93% accuracy I Blaženović, T Kind, H Torbašinović, S Obrenović, SS Mehta, H Tsugawa, ... Journal of cheminformatics 9, 1-12, 2017 | 100 | 2017 |
| Advances in computational metabolomics and databases deepen the understanding of metabolisms H Tsugawa Current opinion in biotechnology 54, 10-17, 2018 | 93 | 2018 |
| Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis A Rai, H Hirakawa, R Nakabayashi, S Kikuchi, K Hayashi, M Rai, ... Nature communications 12 (1), 405, 2021 | 81 | 2021 |
| MRMPROBS suite for metabolomics using large-scale MRM assays H Tsugawa, M Kanazawa, A Ogiwara, M Arita Bioinformatics 30 (16), 2379-2380, 2014 | 75 | 2014 |
| Lipid annotator: towards accurate annotation in non-targeted liquid chromatography high-resolution tandem mass spectrometry (LC-HRMS/MS) lipidomics using a rapid and user … JP Koelmel, X Li, SM Stow, MJ Sartain, A Murali, R Kemperman, ... Metabolites 10 (3), 101, 2020 | 74 | 2020 |
