Marco Previtali
Marco Previtali
Bestätigte E-Mail-Adresse bei unimib.it - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Fully dynamic de Bruijn graphs
D Belazzougui, T Gagie, V Mäkinen, M Previtali
International symposium on string processing and information retrieval, 145-152, 2016
292016
Bidirectional variable-order de Bruijn graphs
D Belazzougui, T Gagie, V Mäkinen, M Previtali, SJ Puglisi
LATIN 2016: Theoretical Informatics, 164-178, 2016
252016
LSG: an external-memory tool to compute string graphs for next-generation sequencing data assembly
P Bonizzoni, GD Vedova, Y Pirola, M Previtali, R Rizzi
Journal of Computational Biology 23 (3), 137-149, 2016
182016
ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events
L Denti, R Rizzi, S Beretta, G Della Vedova, M Previtali, P Bonizzoni
BMC bioinformatics 19 (1), 1-21, 2018
172018
FSG: fast string graph construction for de novo assembly
P Bonizzoni, GD Vedova, Y Pirola, M Previtali, R Rizzi
Journal of computational biology 24 (10), 953-968, 2017
152017
An external-memory algorithm for string graph construction
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
Algorithmica 78 (2), 394-424, 2017
122017
Constructing string graphs in external memory
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
International Workshop on Algorithms in Bioinformatics, 311-325, 2014
112014
MALVA: genotyping by Mapping-free ALlele detection of known VAriants
L Denti, M Previtali, G Bernardini, A Schönhuth, P Bonizzoni
Iscience 18, 20-27, 2019
92019
Mapping RNA-seq data to a transcript graph via approximate pattern matching to a hypertext
S Beretta, P Bonizzoni, L Denti, M Previtali, R Rizzi
International Conference on Algorithms for Computational Biology, 49-61, 2017
92017
Bidirectional variable-order de Bruijn graphs
D Belazzougui, T Gagie, V Mäkinen, M Previtali, SJ Puglisi
International Journal of Foundations of Computer Science 29 (08), 1279-1295, 2018
72018
Divide and conquer computation of the multi-string BWT and LCP array
P Bonizzoni, G Della Vedova, S Nicosia, Y Pirola, M Previtali, R Rizzi
Conference on Computability in Europe, 107-117, 2018
72018
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era
R Rizzi, S Beretta, M Patterson, Y Pirola, M Previtali, G Della Vedova, ...
Quantitative Biology 7 (4), 278-292, 2019
62019
Multithread Multistring Burrows–Wheeler Transform and Longest Common Prefix Array
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
Journal of Computational Biology 26 (9), 948-961, 2019
62019
A New Lightweight Algorithm to compute the BWT and the LCP array of a Set of Strings
P Bonizzoni, G Della Vedova, S Nicosia, M Previtali, R Rizzi
arXiv preprint arXiv:1607.08342, 2016
52016
FSG: fast string graph construction for de novo assembly of reads data
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
International Symposium on Bioinformatics Research and Applications, 27-39, 2016
42016
Computing the BWT and LCP array of a set of strings in external memory
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
arXiv preprint arXiv:1705.07756, 2017
32017
Computing the multi-string BWT and LCP array in external memory
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
Theoretical Computer Science 862, 42-58, 2021
22021
Shark: fishing relevant reads in an RNA-Seq sample
L Denti, Y Pirola, M Previtali, T Ceccato, G Della Vedova, R Rizzi, ...
Bioinformatics 37 (4), 464-472, 2021
22021
Triplet-based similarity score for fully multilabeled trees with poly-occurring labels
S Ciccolella, G Bernardini, L Denti, P Bonizzoni, M Previtali, ...
Bioinformatics 37 (2), 178-184, 2021
22021
MALVIRUS: an integrated web application for viral variant calling
S Ciccolella, L Denti, P Bonizzoni, G Della Vedova, Y Pirola, M Previtali
bioRxiv, 2020
12020
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