| BiGG Models: A platform for integrating, standardizing and sharing genome-scale models ZA King, JS Lu, A Dräger, PC Miller, S Federowicz, JA Lerman, A Ebrahim, ... Nucleic Acids Research, 2015 | 734 | 2015 |
| Recon3D enables a three-dimensional view of gene variation in human metabolism E Brunk, S Sahoo, DC Zielinski, A Altunkaya, A Dräger, N Mih, F Gatto, ... Nature biotechnology 36 (3), 272-281, 2018 | 510 | 2018 |
| Escher: a web application for building, sharing, and embedding data-rich visualizations of biological pathways ZA King, A Dräger, A Ebrahim, N Sonnenschein, NE Lewis, BO Palsson PLoS computational biology 11 (8), e1004321, 2015 | 321 | 2015 |
| Controlled vocabularies and semantics in systems biology M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ... Molecular systems biology 7 (1), 543, 2011 | 309 | 2011 |
| BioJava: an open-source framework for bioinformatics RCG Holland, TA Down, M Pocock, A Prlić, D Huen, K James, S Foisy, ... Bioinformatics 24 (18), 2096-2097, 2008 | 290 | 2008 |
| MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 289* | 2020 |
| Longitudinal multi-omics analyses identify responses of megakaryocytes, erythroid cells, and plasmablasts as hallmarks of severe COVID-19 JP Bernardes, N Mishra, F Tran, T Bahmer, L Best, JI Blase, D Bordoni, ... Immunity 53 (6), 1296-1314. e9, 2020 | 244 | 2020 |
| SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools C Chaouiya, D Bérenguier, SM Keating, A Naldi, MP Van Iersel, ... BMC systems biology 7 (1), 1-15, 2013 | 174 | 2013 |
| Path2Models: large-scale generation of computational models from biochemical pathway maps F Büchel, N Rodriguez, N Swainston, C Wrzodek, T Czauderna, R Keller, ... BMC systems biology 7, 1-19, 2013 | 163 | 2013 |
| BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree CJ Norsigian, N Pusarla, JL McConn, JT Yurkovich, A Dräger, BO Palsson, ... Nucleic acids research 48 (D1), D402-D406, 2020 | 150 | 2020 |
| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 142 | 2020 |
| COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms M Ostaszewski, A Mazein, ME Gillespie, I Kuperstein, A Niarakis, ... Scientific data 7 (1), 136, 2020 | 129 | 2020 |
| JSBML: a flexible Java library for working with SBML A Dräger, N Rodriguez, M Dumousseau, A Dörr, C Wrzodek, N Le Novère, ... Bioinformatics 27 (15), 2167-2168, 2011 | 113 | 2011 |
| Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies A Dräger, M Kronfeld, MJ Ziller, J Supper, H Planatscher, JB Magnus, ... BMC Systems Biology 3 (1), 5, 2009 | 99 | 2009 |
| KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats C Wrzodek, A Dräger, A Zell Bioinformatics 27 (16), 2314-2315, 2011 | 86 | 2011 |
| SBMLsqueezer: a CellDesigner plug-in to generate kinetic rate equations for biochemical networks A Dräger, N Hassis, J Supper, A Schröder, A Zell BMC systems biology 2 (1), 39, 2008 | 84 | 2008 |
| Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655 Y Gao, JT Yurkovich, SW Seo, I Kabimoldayev, A Dräger, K Chen, ... Nucleic acids research 46 (20), 10682-10696, 2018 | 79 | 2018 |
| The systems biology markup language (SBML): language specification for level 3 version 2 core M Hucka, FT Bergmann, A Dräger, S Hoops, SM Keating, N Le Novère, ... Journal of integrative bioinformatics 15 (1), 2018 | 76 | 2018 |
| Synthetic promoters capable of driving robust nuclear gene expression in the green alga Chlamydomonas reinhardtii MA Scranton, JT Ostrand, DR Georgianna, SM Lofgren, D Li, RC Ellis, ... Algal research 15, 135-142, 2016 | 76 | 2016 |
| The systems biology markup language (SBML): language specification for level 3 version 2 core release 2 M Hucka, FT Bergmann, C Chaouiya, A Dräger, S Hoops, SM Keating, ... Journal of integrative bioinformatics 16 (2), 20190021, 2019 | 73 | 2019 |
Andreas ZellProfessor für Informatik, Universität TübingenVerified email at uni-tuebingen.de
