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Sergey Koren
Sergey Koren
Associate Investigator, NHGRI/NIH
Bestätigte E-Mail-Adresse bei nih.gov - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Structure, function and diversity of the healthy human microbiome
nature 486 (7402), 207-214, 2012
96452012
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
S Koren, BP Walenz, K Berlin, JR Miller, NH Bergman, AM Phillippy
Genome research 27 (5), 722-736, 2017
54352017
A framework for human microbiome research
nature 486 (7402), 215-221, 2012
24222012
Mash: fast genome and metagenome distance estimation using MinHash
BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ...
Genome biology 17 (1), 1-14, 2016
21482016
Nanopore sequencing and assembly of a human genome with ultra-long reads
M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ...
Nature biotechnology 36 (4), 338-345, 2018
17452018
Assembly algorithms for next-generation sequencing data
JR Miller, S Koren, G Sutton
Genomics 95 (6), 315-327, 2010
15302010
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
13962022
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes
TJ Treangen, BD Ondov, S Koren, AM Phillippy
Genome biology 15, 1-15, 2014
13582014
Hybrid error correction and de novo assembly of single-molecule sequencing reads
S Koren, MC Schatz, BP Walenz, J Martin, JT Howard, G Ganapathy, ...
Nature biotechnology 30 (7), 693-700, 2012
11682012
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Nature biotechnology 37 (10), 1155-1162, 2019
11232019
Towards complete and error-free genome assemblies of all vertebrate species
A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ...
Nature 592 (7856), 737-746, 2021
10752021
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
K Berlin, S Koren, CS Chin, JP Drake, JM Landolin, AM Phillippy
Nature biotechnology 33 (6), 623-630, 2015
10402015
GAGE: A critical evaluation of genome assemblies and assembly algorithms
SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ...
Genome Research 22 (3), 557-567, 2012
8712012
Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies
A Rhie, BP Walenz, S Koren, AM Phillippy
Genome biology 21 (1), 1-27, 2020
8102020
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
VA Schneider, T Graves-Lindsay, K Howe, N Bouk, HC Chen, PA Kitts, ...
Genome research 27 (5), 849-864, 2017
7952017
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
Gigascience 2 (1), 2047-217X-2-10, 2013
7712013
Aggressive assembly of pyrosequencing reads with mates
JR Miller, AL Delcher, S Koren, E Venter, BP Walenz, A Brownley, ...
Bioinformatics 24 (24), 2818-2824, 2008
6662008
Telomere-to-telomere assembly of a complete human X chromosome
KH Miga, S Koren, A Rhie, MR Vollger, A Gershman, A Bzikadze, ...
Nature 585 (7823), 79-84, 2020
6482020
The bonobo genome compared with the chimpanzee and human genomes
K Prüfer, K Munch, I Hellmann, K Akagi, JR Miller, B Walenz, S Koren, ...
Nature 486 (7404), 527-531, 2012
6392012
Assemblathon 1: A competitive assessment of de novo short read assembly methods
D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ...
Genome research 21 (12), 2224-2241, 2011
6172011
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